3a3t

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:41, 6 November 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
 +
==The oxidoreductase NmDsbA1 from N. meningitidis==
==The oxidoreductase NmDsbA1 from N. meningitidis==
-
<StructureSection load='3a3t' size='340' side='right' caption='[[3a3t]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
+
<StructureSection load='3a3t' size='340' side='right'caption='[[3a3t]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3a3t]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Neimi Neimi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A3T OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A3T FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3a3t]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Neisseria_meningitidis_serogroup_B Neisseria meningitidis serogroup B]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A3T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3A3T FirstGlance]. <br>
-
</td></tr><tr><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2znm|2znm]], [[1dsb|1dsb]]</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
<tr><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">dsbA-1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=491 NEIMI])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a3t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a3t OCA], [https://pdbe.org/3a3t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a3t RCSB], [https://www.ebi.ac.uk/pdbsum/3a3t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a3t ProSAT]</span></td></tr>
-
<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Protein_disulfide-isomerase Protein disulfide-isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.4.1 5.3.4.1] </span></td></tr>
+
</table>
-
<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a3t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a3t OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3a3t RCSB], [http://www.ebi.ac.uk/pdbsum/3a3t PDBsum]</span></td></tr>
+
== Function ==
-
<table>
+
[https://www.uniprot.org/uniprot/Q9K189_NEIMB Q9K189_NEIMB]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a3/3a3t_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a3/3a3t_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3a3t ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 26: Line 27:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 3a3t" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Neimi]]
+
[[Category: Large Structures]]
-
[[Category: Protein disulfide-isomerase]]
+
[[Category: Neisseria meningitidis serogroup B]]
-
[[Category: Beddoe, T.]]
+
[[Category: Beddoe T]]
-
[[Category: Boyle, T P.]]
+
[[Category: Boyle TP]]
-
[[Category: Bushell, S.]]
+
[[Category: Bushell S]]
-
[[Category: Byres, E.]]
+
[[Category: Byres E]]
-
[[Category: Doak, B.]]
+
[[Category: Doak B]]
-
[[Category: Graham, B.]]
+
[[Category: Graham B]]
-
[[Category: Heras, B.]]
+
[[Category: Heras B]]
-
[[Category: Kahler, C M.]]
+
[[Category: Kahler CM]]
-
[[Category: Rimmer, K.]]
+
[[Category: Rimmer K]]
-
[[Category: Rossjohn, J.]]
+
[[Category: Rossjohn J]]
-
[[Category: Scanlon, M J.]]
+
[[Category: Scanlon MJ]]
-
[[Category: Scoullar, J.]]
+
[[Category: Scoullar J]]
-
[[Category: Simpson, J S.]]
+
[[Category: Simpson JS]]
-
[[Category: Vivian, J P.]]
+
[[Category: Vivian JP]]
-
[[Category: Wilce, M C.J.]]
+
[[Category: Wilce MCJ]]
-
[[Category: Dsba fold]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Thioredoxin-like]]
+

Current revision

The oxidoreductase NmDsbA1 from N. meningitidis

PDB ID 3a3t

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools