4ji3

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:31, 12 February 2025) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal Structure of 30S ribosomal subunit from Thermus thermophilus==
==Crystal Structure of 30S ribosomal subunit from Thermus thermophilus==
-
<StructureSection load='4ji3' size='340' side='right' caption='[[4ji3]], [[Resolution|resolution]] 3.35&Aring;' scene=''>
+
<StructureSection load='4ji3' size='340' side='right'caption='[[4ji3]], [[Resolution|resolution]] 3.35&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4ji3]] is a 21 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JI3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4JI3 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4ji3]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JI3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4JI3 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SRY:STREPTOMYCIN'>SRY</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.35&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=2MG:2N-METHYLGUANOSINE-5-MONOPHOSPHATE'>2MG</scene>, <scene name='pdbligand=4OC:4N,O2-METHYLCYTIDINE-5-MONOPHOSPHATE'>4OC</scene>, <scene name='pdbligand=5MC:5-METHYLCYTIDINE-5-MONOPHOSPHATE'>5MC</scene>, <scene name='pdbligand=7MG:7N-METHYL-8-HYDROGUANOSINE-5-MONOPHOSPHATE'>7MG</scene>, <scene name='pdbligand=M2G:N2-DIMETHYLGUANOSINE-5-MONOPHOSPHATE'>M2G</scene>, <scene name='pdbligand=MA6:6N-DIMETHYLADENOSINE-5-MONOPHOSHATE'>MA6</scene>, <scene name='pdbligand=PSU:PSEUDOURIDINE-5-MONOPHOSPHATE'>PSU</scene>, <scene name='pdbligand=UR3:3-METHYLURIDINE-5-MONOPHOSHATE'>UR3</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2MG:2N-METHYLGUANOSINE-5-MONOPHOSPHATE'>2MG</scene>, <scene name='pdbligand=4OC:4N,O2-METHYLCYTIDINE-5-MONOPHOSPHATE'>4OC</scene>, <scene name='pdbligand=5MC:5-METHYLCYTIDINE-5-MONOPHOSPHATE'>5MC</scene>, <scene name='pdbligand=7MG:7N-METHYL-8-HYDROGUANOSINE-5-MONOPHOSPHATE'>7MG</scene>, <scene name='pdbligand=M2G:N2-DIMETHYLGUANOSINE-5-MONOPHOSPHATE'>M2G</scene>, <scene name='pdbligand=MA6:6N-DIMETHYLADENOSINE-5-MONOPHOSHATE'>MA6</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PSU:PSEUDOURIDINE-5-MONOPHOSPHATE'>PSU</scene>, <scene name='pdbligand=SRY:STREPTOMYCIN'>SRY</scene>, <scene name='pdbligand=UR3:3-METHYLURIDINE-5-MONOPHOSHATE'>UR3</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4ji0|4ji0]], [[4ji1|4ji1]], [[4ji2|4ji2]], [[4ji4|4ji4]], [[4ji5|4ji5]], [[4ji6|4ji6]], [[4ji7|4ji7]], [[4ji8|4ji8]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ji3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ji3 OCA], [https://pdbe.org/4ji3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ji3 RCSB], [https://www.ebi.ac.uk/pdbsum/4ji3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ji3 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ji3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ji3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ji3 RCSB], [http://www.ebi.ac.uk/pdbsum/4ji3 PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/RS13_THET8 RS13_THET8] Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome structure it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the top of the two subunits; these bridges are in contact with the A site and P site tRNAs respectively and are implicated in movement during ribosome translocation. Separately contacts the tRNAs in the A and P sites.[HAMAP-Rule:MF_01315]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 16: Line 18:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 4ji3" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Ribosomal protein THX 3D structures|Ribosomal protein THX 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Thermus thermophilus]]
+
[[Category: Large Structures]]
-
[[Category: Blanchard, S.]]
+
[[Category: Thermus thermophilus HB8]]
-
[[Category: Carr, J.]]
+
[[Category: Blanchard S]]
-
[[Category: Dahlberg, A E.]]
+
[[Category: Carr J]]
-
[[Category: Demirci, H.]]
+
[[Category: Dahlberg AE]]
-
[[Category: Gregory, S T.]]
+
[[Category: Demirci H]]
-
[[Category: Jogl, G.]]
+
[[Category: Gregory ST]]
-
[[Category: Murphy, E L.]]
+
[[Category: Jogl G]]
-
[[Category: Murphy, F V.]]
+
[[Category: Murphy EL]]
-
[[Category: Wang, L.]]
+
[[Category: Murphy FV]]
-
[[Category: 30s ribosomal subunit]]
+
[[Category: Wang L]]
-
[[Category: Antibiotic resistance]]
+
-
[[Category: Decoding]]
+
-
[[Category: Ribosome]]
+
-
[[Category: Rna structure]]
+
-
[[Category: Streptomycin]]
+
-
[[Category: Thermus thermophilus]]
+

Current revision

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

PDB ID 4ji3

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4ji3"
Personal tools