4wnr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: '''Unreleased structure''' The entry 4wnr is ON HOLD Authors: Terheyden, S. Description: Structure of methanosarcina barkeri Roco2 RocCORdC bound to GDP)
Current revision (10:43, 10 January 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 4wnr is ON HOLD
+
==Structure of methanosarcina barkeri Roco2 RocCORdC bound to GDP==
 +
<StructureSection load='4wnr' size='340' side='right'caption='[[4wnr]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[4wnr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanosarcina_barkeri_str._Fusaro Methanosarcina barkeri str. Fusaro]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4WNR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4WNR FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4wnr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4wnr OCA], [https://pdbe.org/4wnr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4wnr RCSB], [https://www.ebi.ac.uk/pdbsum/4wnr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4wnr ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q46A62_METBF Q46A62_METBF]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Mutations in leucine-rich-repeat kinase 2 (LRRK2) are the most frequent cause of late-onset Parkinson's disease (PD). LRRK2 belongs to the Roco family of proteins which share a conserved Ras-like G domain (Roc) and a C-terminal of Roc domain (COR) tandem. The nucleotide state of small G proteins is strictly controlled by Guanine nucleotide Exchange Factors (GEFs) and GTPase activating proteins (GAPs). Because of contradictory structural and biochemical data, the regulatory mechanism of the LRRK2 Roc G-domain and the RocCOR tandem is still under debate. Here we present the first nucleotide bound Roc structure and used LRRK2 and bacterial Roco proteins to characterize the RocCOR function in more detail. Nucleotide binding induces a drastic structural change in the Roc-COR domain interface, a region strongly implicated in LRRK2 patient mutations. Our data confirm previous assumptions that the C-terminal sub-domain of COR functions as a dimerization device. We show that dimer formation is independent of nucleotide. The affinity for GDP/GTP is in the micromolar range, the results of which are fast dissociation rates in the s-1 range. Thus, Roco proteins are unlikely in need of GEFs to achieve activation. Monomeric LRRK2 and Roco G-domains have a similar low GTPase activity as small G proteins. We show that GTPase activity in bacterial Roco is stimulated by nucleotide dependent dimerization of the G-domain within the complex. We thus propose that Roco proteins don't require GAPs to stimulate GTP hydrolysis but stimulate each other by one monomer completing the catalytic machinery of the other.
-
Authors: Terheyden, S.
+
Revisiting the Roco G protein cycle.,Terheyden S, Ho FY, Gilsbach BK, Wittinghofer A, Kortholt A Biochem J. 2014 Oct 15. PMID:25317655<ref>PMID:25317655</ref>
-
Description: Structure of methanosarcina barkeri Roco2 RocCORdC bound to GDP
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 4wnr" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Methanosarcina barkeri str. Fusaro]]
 +
[[Category: Terheyden S]]

Current revision

Structure of methanosarcina barkeri Roco2 RocCORdC bound to GDP

PDB ID 4wnr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools