1jwi

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:28, 23 October 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1jwi.gif|left|200px]]
 
-
{{Structure
+
==Crystal Structure of Bitiscetin, a von Willeband Factor-dependent Platelet Aggregation Inducer.==
-
|PDB= 1jwi |SIZE=350|CAPTION= <scene name='initialview01'>1jwi</scene>, resolution 2.00&Aring;
+
<StructureSection load='1jwi' size='340' side='right'caption='[[1jwi]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[1jwi]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bitis_arietans Bitis arietans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JWI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JWI FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
|GENE=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jwi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jwi OCA], [https://pdbe.org/1jwi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jwi RCSB], [https://www.ebi.ac.uk/pdbsum/1jwi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jwi ProSAT]</span></td></tr>
-
}}
+
</table>
-
 
+
== Function ==
-
'''Crystal Structure of Bitiscetin, a von Willeband Factor-dependent Platelet Aggregation Inducer.'''
+
[https://www.uniprot.org/uniprot/SLA_BITAR SLA_BITAR] Snaclec that binds to von Willebrand factor (VWF) and induces its interaction with GPIbalpha (GP1BA) (via the vWF A1 domain), resulting in platelet aggregation.<ref>PMID:12069583</ref> <ref>PMID:8806626</ref>
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==Overview==
+
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jw/1jwi_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1jwi ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
Bitiscetin, a C-type lectin-like protein isolated from the venom of the snake Bitis arientans, promotes the interactions between plasma von Willebrand factor (VWF) and platelet membrane glycoprotein Ib (GPIb) to induce platelet aggregation. We report here the crystal structure of bitiscetin at 2.0 A resolution. The overall fold is similar to those of coagulation factor IX/X-binding protein (IX/X-bp) and flavocetin-A (a GPIb-binding protein), although these three proteins are functionally distinct from one another. The characteristic property determining target recognition is explained mainly by the differences in the surface potential on the central concave surface. A negatively charged patch on the surface of bitiscetin is a candidate for the site of binding to the positively charged surface of the VWF A1 domain, as shown in the case of another platelet aggregation inducer, botrocetin. However, a positively charged patch near the central concave surface is unique for bitiscetin and suggests that it is the binding site for the negatively charged surface of the VWF A3 domain. Thus, the interactions accounting for VWF activation by bitiscetin possibly involve both the A1 and A3 domains of VWF, indicating a specific mechanism of VWF activation by bitiscetin.
Bitiscetin, a C-type lectin-like protein isolated from the venom of the snake Bitis arientans, promotes the interactions between plasma von Willebrand factor (VWF) and platelet membrane glycoprotein Ib (GPIb) to induce platelet aggregation. We report here the crystal structure of bitiscetin at 2.0 A resolution. The overall fold is similar to those of coagulation factor IX/X-binding protein (IX/X-bp) and flavocetin-A (a GPIb-binding protein), although these three proteins are functionally distinct from one another. The characteristic property determining target recognition is explained mainly by the differences in the surface potential on the central concave surface. A negatively charged patch on the surface of bitiscetin is a candidate for the site of binding to the positively charged surface of the VWF A1 domain, as shown in the case of another platelet aggregation inducer, botrocetin. However, a positively charged patch near the central concave surface is unique for bitiscetin and suggests that it is the binding site for the negatively charged surface of the VWF A3 domain. Thus, the interactions accounting for VWF activation by bitiscetin possibly involve both the A1 and A3 domains of VWF, indicating a specific mechanism of VWF activation by bitiscetin.
-
==About this Structure==
+
Crystal structure of bitiscetin, a von Willebrand factor-dependent platelet aggregation inducer.,Hirotsu S, Mizuno H, Fukuda K, Qi MC, Matsui T, Hamako J, Morita T, Titani K Biochemistry. 2001 Nov 13;40(45):13592-7. PMID:11695907<ref>PMID:11695907</ref>
-
1JWI is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Bitis_arientans Bitis arientans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JWI OCA].
+
-
 
+
-
==Reference==
+
-
Crystal structure of bitiscetin, a von Willebrand factor-dependent platelet aggregation inducer., Hirotsu S, Mizuno H, Fukuda K, Qi MC, Matsui T, Hamako J, Morita T, Titani K, Biochemistry. 2001 Nov 13;40(45):13592-7. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11695907 11695907]
+
-
[[Category: Bitis arientans]]
+
-
[[Category: Protein complex]]
+
-
[[Category: Fukuda, K.]]
+
-
[[Category: Hamako, J.]]
+
-
[[Category: Hirotsu, S.]]
+
-
[[Category: Matsui, T.]]
+
-
[[Category: Mizuno, H.]]
+
-
[[Category: Morita, T.]]
+
-
[[Category: Qi, M C.]]
+
-
[[Category: Titani, K.]]
+
-
[[Category: c-type lectin]]
+
-
[[Category: domain swapping]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 12:09:27 2008''
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 1jwi" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Bitis arietans]]
 +
[[Category: Large Structures]]
 +
[[Category: Fukuda K]]
 +
[[Category: Hamako J]]
 +
[[Category: Hirotsu S]]
 +
[[Category: Matsui T]]
 +
[[Category: Mizuno H]]
 +
[[Category: Morita T]]
 +
[[Category: Qi MC]]
 +
[[Category: Titani K]]

Current revision

Crystal Structure of Bitiscetin, a von Willeband Factor-dependent Platelet Aggregation Inducer.

PDB ID 1jwi

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools