2xe0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:29, 20 December 2023) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
==MOLECULAR BASIS OF ENGINEERED MEGANUCLEASE TARGETING OF THE ENDOGENOUS HUMAN RAG1 LOCUS==
+
 
-
<StructureSection load='2xe0' size='340' side='right' caption='[[2xe0]], [[Resolution|resolution]] 2.31&Aring;' scene=''>
+
==Molecular basis of engineered meganuclease targeting of the endogenous human RAG1 locus==
 +
<StructureSection load='2xe0' size='340' side='right'caption='[[2xe0]], [[Resolution|resolution]] 2.31&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2xe0]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Chlamydomonas_reinhardtii Chlamydomonas reinhardtii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XE0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2XE0 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2xe0]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Chlamydomonas_reinhardtii Chlamydomonas reinhardtii] and [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XE0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XE0 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PGO:S-1,2-PROPANEDIOL'>PGO</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.31&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2xe0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xe0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2xe0 RCSB], [http://www.ebi.ac.uk/pdbsum/2xe0 PDBsum]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PGO:S-1,2-PROPANEDIOL'>PGO</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xe0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xe0 OCA], [https://pdbe.org/2xe0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xe0 RCSB], [https://www.ebi.ac.uk/pdbsum/2xe0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xe0 ProSAT]</span></td></tr>
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
Line 10: Line 12:
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xe/2xe0_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xe/2xe0_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2xe0 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 24: Line 26:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 2xe0" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
Line 29: Line 32:
</StructureSection>
</StructureSection>
[[Category: Chlamydomonas reinhardtii]]
[[Category: Chlamydomonas reinhardtii]]
-
[[Category: Abramo, M D.]]
+
[[Category: Homo sapiens]]
-
[[Category: Alibes, A.]]
+
[[Category: Large Structures]]
-
[[Category: Blanco, F J.]]
+
[[Category: Alibes A]]
-
[[Category: Chion-Sotine, I.]]
+
[[Category: Blanco FJ]]
-
[[Category: Coloma, J.]]
+
[[Category: Chion-Sotine I]]
-
[[Category: Daboussi, F.]]
+
[[Category: Coloma J]]
-
[[Category: Duchateau, P.]]
+
[[Category: D'Abramo M]]
-
[[Category: Gervasio, F L.]]
+
[[Category: Daboussi F]]
-
[[Category: Grizot, S.]]
+
[[Category: Duchateau P]]
-
[[Category: Marenchino, M.]]
+
[[Category: Gervasio FL]]
-
[[Category: Merino, N.]]
+
[[Category: Grizot S]]
-
[[Category: Montoya, G.]]
+
[[Category: Marenchino M]]
-
[[Category: Munoz, I G.]]
+
[[Category: Merino N]]
-
[[Category: Paques, F.]]
+
[[Category: Montoya G]]
-
[[Category: Prieto, J.]]
+
[[Category: Munoz IG]]
-
[[Category: Redondo, P.]]
+
[[Category: Paques F]]
-
[[Category: Serrano, L.]]
+
[[Category: Prieto J]]
-
[[Category: Smith, J.]]
+
[[Category: Redondo P]]
-
[[Category: Stricher, F.]]
+
[[Category: Serrano L]]
-
[[Category: Subramanian, S.]]
+
[[Category: Smith J]]
-
[[Category: Villate, M.]]
+
[[Category: Stricher F]]
-
[[Category: Dna binding protein]]
+
[[Category: Subramanian S]]
-
[[Category: Dna binding protein-dna complex]]
+
[[Category: Villate M]]
-
[[Category: Double-strand break]]
+
-
[[Category: Homing endonuclease]]
+
-
[[Category: Homologous recombination]]
+
-
[[Category: Human rag1 gene]]
+

Current revision

Molecular basis of engineered meganuclease targeting of the endogenous human RAG1 locus

PDB ID 2xe0

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools