This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2x5k

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:24, 20 December 2023) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
==STRUCTURE OF AN ACTIVE SITE MUTANT OF THE D-ERYTHROSE-4-PHOSPHATE DEHYDROGENASE FROM E. COLI==
+
 
-
<StructureSection load='2x5k' size='340' side='right' caption='[[2x5k]], [[Resolution|resolution]] 2.37&Aring;' scene=''>
+
==Structure of an active site mutant of the D-Erythrose-4-Phosphate Dehydrogenase from E. coli==
 +
<StructureSection load='2x5k' size='340' side='right'caption='[[2x5k]], [[Resolution|resolution]] 2.37&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2x5k]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2X5K OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2X5K FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2x5k]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2X5K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2X5K FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.37&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2x5j|2x5j]], [[2x5m|2x5m]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Erythrose-4-phosphate_dehydrogenase Erythrose-4-phosphate dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.2.1.72 1.2.1.72] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2x5k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2x5k OCA], [https://pdbe.org/2x5k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2x5k RCSB], [https://www.ebi.ac.uk/pdbsum/2x5k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2x5k ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2x5k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2x5k OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2x5k RCSB], [http://www.ebi.ac.uk/pdbsum/2x5k PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/E4PD_ECOLI E4PD_ECOLI] Catalyzes the NAD-dependent conversion of D-erythrose 4-phosphate to 4-phosphoerythronate.<ref>PMID:9182530</ref> <ref>PMID:9696782</ref>
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Erythrose-4-phosphate dehydrogenase]]
+
[[Category: Escherichia coli K-12]]
-
[[Category: Escherichia coli]]
+
[[Category: Large Structures]]
-
[[Category: Boschi-Muller, S.]]
+
[[Category: Boschi-Muller S]]
-
[[Category: Branlant, G.]]
+
[[Category: Branlant G]]
-
[[Category: Corbier, C.]]
+
[[Category: Corbier C]]
-
[[Category: Didierjean, C.]]
+
[[Category: Didierjean C]]
-
[[Category: Moniot, S.]]
+
[[Category: Moniot S]]
-
[[Category: Aldehyde dehydrogenase]]
+
-
[[Category: Hydride transfer]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Pyridoxine biosynthesis]]
+
-
[[Category: S-loop]]
+

Current revision

Structure of an active site mutant of the D-Erythrose-4-Phosphate Dehydrogenase from E. coli

PDB ID 2x5k

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools