2kk9

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (01:08, 21 November 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Anti-group A streptococcal vaccine epitope: structure, stability and its ability to interact with HLA class II molecules==
==Anti-group A streptococcal vaccine epitope: structure, stability and its ability to interact with HLA class II molecules==
-
<StructureSection load='2kk9' size='340' side='right' caption='[[2kk9]], [[NMR_Ensembles_of_Models | 1 NMR models]]' scene=''>
+
<StructureSection load='2kk9' size='340' side='right'caption='[[2kk9]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2kk9]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KK9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2KK9 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2kk9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pyogenes_serotype_M5 Streptococcus pyogenes serotype M5]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KK9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KK9 FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 1 model</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2kk9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kk9 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2kk9 RCSB], [http://www.ebi.ac.uk/pdbsum/2kk9 PDBsum]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kk9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kk9 OCA], [https://pdbe.org/2kk9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kk9 RCSB], [https://www.ebi.ac.uk/pdbsum/2kk9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kk9 ProSAT]</span></td></tr>
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
Line 10: Line 12:
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kk/2kk9_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kk/2kk9_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2kk9 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 24: Line 26:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 2kk9" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Alba, M P.]]
+
[[Category: Large Structures]]
-
[[Category: Guilherme, L.]]
+
[[Category: Streptococcus pyogenes serotype M5]]
-
[[Category: Kalil, J.]]
+
[[Category: Alba MP]]
-
[[Category: Patarroyo, M E.]]
+
[[Category: Guilherme L]]
-
[[Category: Antimicrobial protein]]
+
[[Category: Kalil J]]
-
[[Category: Cell wall]]
+
[[Category: Patarroyo ME]]
-
[[Category: M5 protein]]
+
-
[[Category: Peptidoglycan-anchor]]
+
-
[[Category: Phagocytosis]]
+
-
[[Category: S. pyogene]]
+
-
[[Category: Secreted]]
+
-
[[Category: Synthetic peptide vaccine]]
+
-
[[Category: Unknown function]]
+
-
[[Category: Virulence]]
+

Current revision

Anti-group A streptococcal vaccine epitope: structure, stability and its ability to interact with HLA class II molecules

PDB ID 2kk9

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools