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2rk9
From Proteopedia
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==The crystal structure of a glyoxalase/bleomycin resistance protein/dioxygenase superfamily member from Vibrio splendidus 12B01== | ==The crystal structure of a glyoxalase/bleomycin resistance protein/dioxygenase superfamily member from Vibrio splendidus 12B01== | ||
| - | <StructureSection load='2rk9' size='340' side='right' caption='[[2rk9]], [[Resolution|resolution]] 1.60Å' scene=''> | + | <StructureSection load='2rk9' size='340' side='right'caption='[[2rk9]], [[Resolution|resolution]] 1.60Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2rk9]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2rk9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibs1 Vibs1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RK9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RK9 FirstGlance]. <br> |
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">84385607, V12B01_25774 ([ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">84385607, V12B01_25774 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=314291 VIBS1])</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rk9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rk9 OCA], [https://pdbe.org/2rk9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rk9 RCSB], [https://www.ebi.ac.uk/pdbsum/2rk9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rk9 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2rk9 TOPSAN]</span></td></tr> |
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
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Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rk/2rk9_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rk/2rk9_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rk9 ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
==See Also== | ==See Also== | ||
| - | *[[ | + | *[[Dioxygenase 3D structures|Dioxygenase 3D structures]] |
| + | *[[Glyoxalase 3D structures|Glyoxalase 3D structures]] | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| + | [[Category: Vibs1]] | ||
| + | [[Category: Burley, S K]] | ||
| + | [[Category: Eswaramoorthy, S]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Sauder, J M]] | ||
| + | [[Category: Swaminathan, S]] | ||
[[Category: Tyagi, R]] | [[Category: Tyagi, R]] | ||
[[Category: Glyoxalase/bleomycin resistance protein/dioxygenase superfamily]] | [[Category: Glyoxalase/bleomycin resistance protein/dioxygenase superfamily]] | ||
| + | [[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]] | ||
| + | [[Category: Oxidoreductase]] | ||
| + | [[Category: PSI, Protein structure initiative]] | ||
Current revision
The crystal structure of a glyoxalase/bleomycin resistance protein/dioxygenase superfamily member from Vibrio splendidus 12B01
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Categories: Large Structures | Vibs1 | Burley, S K | Eswaramoorthy, S | Structural genomic | Sauder, J M | Swaminathan, S | Tyagi, R | Glyoxalase/bleomycin resistance protein/dioxygenase superfamily | NYSGXRC, New York SGX Research Center for Structural Genomics | Oxidoreductase | PSI, Protein structure initiative
