This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2haf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:31, 14 February 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of a putative translation repressor from Vibrio cholerae==
==Crystal structure of a putative translation repressor from Vibrio cholerae==
-
<StructureSection load='2haf' size='340' side='right' caption='[[2haf]], [[Resolution|resolution]] 2.88&Aring;' scene=''>
+
<StructureSection load='2haf' size='340' side='right'caption='[[2haf]], [[Resolution|resolution]] 2.88&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2haf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HAF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2HAF FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2haf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae Vibrio cholerae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HAF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HAF FirstGlance]. <br>
-
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2haf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2haf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2haf RCSB], [http://www.ebi.ac.uk/pdbsum/2haf PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2haf TOPSAN]</span></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.88&#8491;</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2haf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2haf OCA], [https://pdbe.org/2haf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2haf RCSB], [https://www.ebi.ac.uk/pdbsum/2haf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2haf ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2haf TOPSAN]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Y467_VIBCH Y467_VIBCH]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ha/2haf_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ha/2haf_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2haf ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Vibrio cholerae]]
[[Category: Vibrio cholerae]]
-
[[Category: Burley, S K]]
+
[[Category: Burley SK]]
-
[[Category: Kumaran, D]]
+
[[Category: Kumaran D]]
-
[[Category: Structural genomic]]
+
[[Category: Seetharaman J]]
-
[[Category: Seetharaman, J]]
+
[[Category: Sugadev R]]
-
[[Category: Sugadev, R]]
+
[[Category: Swaminathan S]]
-
[[Category: Swaminathan, S]]
+
-
[[Category: Alpha/beta]]
+
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Translation repressor]]
+

Current revision

Crystal structure of a putative translation repressor from Vibrio cholerae

PDB ID 2haf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools