This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3dby

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:59, 2 February 2022) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of uncharacterized protein from Bacillus cereus G9241 (CSAP Target)==
==Crystal structure of uncharacterized protein from Bacillus cereus G9241 (CSAP Target)==
-
<StructureSection load='3dby' size='340' side='right' caption='[[3dby]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
+
<StructureSection load='3dby' size='340' side='right'caption='[[3dby]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3dby]] is a 20 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_cereus Bacillus cereus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DBY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DBY FirstGlance]. <br>
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DBY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DBY FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene></td></tr>
+
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dby FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dby OCA], [https://pdbe.org/3dby PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dby RCSB], [https://www.ebi.ac.uk/pdbsum/3dby PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dby ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3dby TOPSAN]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BCE_G9241_0798 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1396 Bacillus cereus])</td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dby FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dby OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dby RCSB], [http://www.ebi.ac.uk/pdbsum/3dby PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3dby TOPSAN]</span></td></tr>
+
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
Line 11: Line 10:
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/db/3dby_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/db/3dby_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dby ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacillus cereus]]
+
[[Category: Large Structures]]
-
[[Category: Almo, S C]]
+
[[Category: Almo SC]]
-
[[Category: Bonanno, J B]]
+
[[Category: Bonanno JB]]
-
[[Category: Burley, S K]]
+
[[Category: Burley SK]]
-
[[Category: Freeman, J]]
+
[[Category: Freeman J]]
-
[[Category: Groshong, C]]
+
[[Category: Groshong C]]
-
[[Category: Hu, S]]
+
[[Category: Hu S]]
-
[[Category: Structural genomic]]
+
[[Category: Ozyurt S]]
-
[[Category: Ozyurt, S]]
+
[[Category: Ramagopal UA]]
-
[[Category: Ramagopal, U A]]
+
[[Category: Rodgers L]]
-
[[Category: Rodgers, L]]
+
[[Category: Wasserman S]]
-
[[Category: Wasserman, S]]
+
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Unknown function]]
+

Current revision

Crystal structure of uncharacterized protein from Bacillus cereus G9241 (CSAP Target)

PDB ID 3dby

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools