This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3egc

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:47, 21 February 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of a putative ribose operon repressor from Burkholderia thailandensis==
==Crystal structure of a putative ribose operon repressor from Burkholderia thailandensis==
-
<StructureSection load='3egc' size='340' side='right' caption='[[3egc]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
+
<StructureSection load='3egc' size='340' side='right'caption='[[3egc]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3egc]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Burkholderia_thailandensis Burkholderia thailandensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EGC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3EGC FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3egc]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Burkholderia_thailandensis_E264 Burkholderia thailandensis E264]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EGC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EGC FirstGlance]. <br>
-
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BTH_I0812 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=57975 Burkholderia thailandensis])</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.35&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3egc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3egc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3egc RCSB], [http://www.ebi.ac.uk/pdbsum/3egc PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/3egc TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3egc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3egc OCA], [https://pdbe.org/3egc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3egc RCSB], [https://www.ebi.ac.uk/pdbsum/3egc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3egc ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3egc TOPSAN]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q2T0D1_BURTA Q2T0D1_BURTA]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/eg/3egc_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/eg/3egc_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3egc ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Burkholderia thailandensis]]
+
[[Category: Burkholderia thailandensis E264]]
-
[[Category: Almo, S C]]
+
[[Category: Large Structures]]
-
[[Category: Bain, K T]]
+
[[Category: Almo SC]]
-
[[Category: Bonanno, J B]]
+
[[Category: Bain KT]]
-
[[Category: Burley, S K]]
+
[[Category: Bonanno JB]]
-
[[Category: Gilmore, M]]
+
[[Category: Burley SK]]
-
[[Category: Hu, S]]
+
[[Category: Gilmore M]]
-
[[Category: Structural genomic]]
+
[[Category: Hu S]]
-
[[Category: Patskovsky, Y]]
+
[[Category: Patskovsky Y]]
-
[[Category: Romero, R]]
+
[[Category: Romero R]]
-
[[Category: Sauder, J M]]
+
[[Category: Sauder JM]]
-
[[Category: Wasserman, S]]
+
[[Category: Wasserman S]]
-
[[Category: Dna-binding]]
+
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Transcription]]
+
-
[[Category: Transcription regulation]]
+
-
[[Category: Unknown function]]
+

Current revision

Crystal structure of a putative ribose operon repressor from Burkholderia thailandensis

PDB ID 3egc

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools