3d7r
From Proteopedia
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==Crystal structure of a putative esterase from Staphylococcus aureus== | ==Crystal structure of a putative esterase from Staphylococcus aureus== | ||
| - | <StructureSection load='3d7r' size='340' side='right' caption='[[3d7r]], [[Resolution|resolution]] 2.01Å' scene=''> | + | <StructureSection load='3d7r' size='340' side='right'caption='[[3d7r]], [[Resolution|resolution]] 2.01Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3d7r]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3d7r]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus_USA300_TCH1516 Staphylococcus aureus subsp. aureus USA300_TCH1516]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D7R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D7R FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BR:BROMIDE+ION'>BR</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand= | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.01Å</td></tr> |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BR:BROMIDE+ION'>BR</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d7r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d7r OCA], [https://pdbe.org/3d7r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d7r RCSB], [https://www.ebi.ac.uk/pdbsum/3d7r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d7r ProSAT]</span></td></tr> | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
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Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d7/3d7r_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d7/3d7r_consurf.spt"</scriptWhenChecked> |
| - | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/ | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> |
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3d7r ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: Staphylococcus aureus subsp. aureus | + | [[Category: Large Structures]] |
| - | [[Category: Battaile | + | [[Category: Staphylococcus aureus subsp. aureus USA300_TCH1516]] |
| - | [[Category: Chan | + | [[Category: Battaile KP]] |
| - | [[Category: Chirgadze | + | [[Category: Chan T]] |
| - | [[Category: Lam | + | [[Category: Chirgadze NY]] |
| - | [[Category: Lam | + | [[Category: Lam K]] |
| - | [[Category: Pai | + | [[Category: Lam R]] |
| - | [[Category: Romanov | + | [[Category: Pai EF]] |
| - | [[Category: Soloveychik | + | [[Category: Romanov V]] |
| - | [[Category: Wu-Brown | + | [[Category: Soloveychik M]] |
| - | + | [[Category: Wu-Brown J]] | |
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Current revision
Crystal structure of a putative esterase from Staphylococcus aureus
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