This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3dea

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:08, 1 November 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Glomerella cingulata PETFP-cutinase complex==
==Glomerella cingulata PETFP-cutinase complex==
-
<StructureSection load='3dea' size='340' side='right' caption='[[3dea]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
+
<StructureSection load='3dea' size='340' side='right'caption='[[3dea]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3dea]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Glomerella_cingulata Glomerella cingulata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DEA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DEA FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3dea]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Colletotrichum_gloeosporioides Colletotrichum gloeosporioides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DEA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DEA FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HZH:1,1,1-TRIFLUORO-3-[(2-PHENYLETHYL)SULFANYL]PROPAN-2-ONE'>HZH</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3dcn|3dcn]], [[3dd5|3dd5]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HZH:1,1,1-TRIFLUORO-3-[(2-PHENYLETHYL)SULFANYL]PROPAN-2-ONE'>HZH</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cutinase Cutinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.74 3.1.1.74] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dea FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dea OCA], [https://pdbe.org/3dea PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dea RCSB], [https://www.ebi.ac.uk/pdbsum/3dea PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dea ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dea FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dea OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dea RCSB], [http://www.ebi.ac.uk/pdbsum/3dea PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CUTI1_COLGL CUTI1_COLGL] Catalyzes the hydrolysis of cutin, a polyester that forms the structure of plant cuticle. Allows pathogenic fungi to penetrate through the cuticular barrier into the host plant during the initial stage of the fungal infection.<ref>PMID:17043825</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/de/3dea_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/de/3dea_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dea ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 26: Line 28:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 3dea" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
-
*[[Cutinase|Cutinase]]
+
*[[Cutinase 3D structures|Cutinase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Cutinase]]
+
[[Category: Colletotrichum gloeosporioides]]
-
[[Category: Glomerella cingulata]]
+
[[Category: Large Structures]]
-
[[Category: Berrisford, J M]]
+
[[Category: Berrisford JM]]
-
[[Category: Craven, C J]]
+
[[Category: Craven CJ]]
-
[[Category: Diba, A B.Farah]]
+
[[Category: Farah Diba AB]]
-
[[Category: Hounslow, A M]]
+
[[Category: Hounslow AM]]
-
[[Category: Huang, H]]
+
[[Category: Huang H]]
-
[[Category: Mahadi, N M]]
+
[[Category: Mahadi NM]]
-
[[Category: Moir, A J.G]]
+
[[Category: Moir AJG]]
-
[[Category: Nathan, S]]
+
[[Category: Nathan S]]
-
[[Category: Nyon, M P]]
+
[[Category: Nyon MP]]
-
[[Category: Rice, D W]]
+
[[Category: Rice DW]]
-
[[Category: Catalytic triad]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Secreted]]
+
-
[[Category: Serine esterase]]
+

Current revision

Glomerella cingulata PETFP-cutinase complex

PDB ID 3dea

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools