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3dcq

From Proteopedia

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==LECB (PA-LII) in complex with the synthetic ligand 2G0==
==LECB (PA-LII) in complex with the synthetic ligand 2G0==
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<StructureSection load='3dcq' size='340' side='right' caption='[[3dcq]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
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<StructureSection load='3dcq' size='340' side='right'caption='[[3dcq]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3dcq]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DCQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DCQ FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3dcq]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DCQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DCQ FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=2G0:(2S)-1-[(2S)-6-AMINO-2-({[(2S,3S,4R,5S,6S)-3,4,5-TRIHYDROXY-6-METHYLTETRAHYDRO-2H-PYRAN-2-YL]ACETYL}AMINO)HEXANOYL]-N-[(1S)-1-CARBAMOYL-3-METHYLBUTYL]PYRROLIDINE-2-CARBOXAMIDE'>2G0</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1oxc|1oxc]], [[1oux|1oux]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2G0:(2S)-1-[(2S)-6-AMINO-2-({[(2S,3S,4R,5S,6S)-3,4,5-TRIHYDROXY-6-METHYLTETRAHYDRO-2H-PYRAN-2-YL]ACETYL}AMINO)HEXANOYL]-N-[(1S)-1-CARBAMOYL-3-METHYLBUTYL]PYRROLIDINE-2-CARBOXAMIDE'>2G0</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lecB, PA3361 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 Pseudomonas aeruginosa])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dcq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dcq OCA], [https://pdbe.org/3dcq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dcq RCSB], [https://www.ebi.ac.uk/pdbsum/3dcq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dcq ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dcq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dcq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dcq RCSB], [http://www.ebi.ac.uk/pdbsum/3dcq PDBsum]</span></td></tr>
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</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q9HYN5_PSEAE Q9HYN5_PSEAE]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
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<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dc/3dcq_consurf.spt"</scriptWhenChecked>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dc/3dcq_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dcq ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
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<div class="pdbe-citations 3dcq" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Large Structures]]
[[Category: Pseudomonas aeruginosa]]
[[Category: Pseudomonas aeruginosa]]
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[[Category: Bartels, K M]]
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[[Category: Bartels KM]]
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[[Category: Buts, L]]
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[[Category: Buts L]]
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[[Category: Cacciarini, M]]
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[[Category: Cacciarini M]]
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[[Category: Camara, M]]
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[[Category: Camara M]]
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[[Category: Crusz, S A]]
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[[Category: Crusz SA]]
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[[Category: Darbre, T]]
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[[Category: Darbre T]]
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[[Category: Diggle, S P]]
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[[Category: Diggle SP]]
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[[Category: Jaeger, K E]]
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[[Category: Jaeger KE]]
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[[Category: Johansson, E M]]
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[[Category: Johansson EM]]
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[[Category: Kadam, R U]]
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[[Category: Kadam RU]]
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[[Category: Kolomiets, E]]
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[[Category: Kolomiets E]]
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[[Category: Loris, R]]
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[[Category: Loris R]]
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[[Category: Nativi, C]]
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[[Category: Nativi C]]
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[[Category: Reymond, J L]]
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[[Category: Reymond JL]]
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[[Category: Rosenau, F]]
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[[Category: Rosenau F]]
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[[Category: Williams, P]]
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[[Category: Williams P]]
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[[Category: Carbohydrate]]
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[[Category: Lectin]]
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[[Category: Sugar binding protein]]
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Current revision

LECB (PA-LII) in complex with the synthetic ligand 2G0

PDB ID 3dcq

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