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User:Karsten Theis/Sandbox 1
From Proteopedia
< User:Karsten Theis(Difference between revisions)
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scene='User:Karsten_Theis/Sandbox_1/Globe3/2' | scene='User:Karsten_Theis/Sandbox_1/Globe3/2' | ||
caption='UvrB' /> | caption='UvrB' /> | ||
| - | + | ||
| + | <ref>DOI:10.1002/open.201300012</ref> | ||
| + | |||
| + | Here is the <scene name='49/491982/Pentane/1'>pentane</scene> molecule. Here is how it can rotate around its single bonds to get a different conformation: | ||
| + | |||
| + | <jmol> | ||
| + | <jmolLink> | ||
| + | <script> var a = [1,2,3,4,5,6,7,8,9,10]; var b = [1,2,3,4,5,6,7,8,9,10]; for(var i IN a) {for(var i IN b){set refreshing false; rotate branch {C3}{C4} 5; rotate branch {C3}{C2} 2; set refreshing true; delay 0.05}} | ||
| + | </script> | ||
| + | <text>rotate</text> | ||
| + | </jmolLink> | ||
| + | </jmol> | ||
| + | |||
| + | <jmol> | ||
| + | <jmolLink> | ||
| + | <script> load $pentane; rotate BRANCH [1 2 3 4 0 900 3 2 1 0 1800 0] 10 | ||
| + | </script> | ||
| + | <text>Simpler, single command script</text> | ||
| + | </jmolLink> | ||
| + | </jmol> | ||
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| + | |||
| + | |||
| + | |||
| + | load $pentane; rotate BRANCH [1 2 3 4 0 900 3 2 1 0 1800 0] 10 | ||
| + | |||
| + | For large structures, use label "%D" to find numbers of selected atoms. | ||
| + | |||
| + | Metallorganic framework <scene name='49/491982/Mof_hexagonal/1'>hexagonal</scene> or cubic | ||
| + | |||
<scene name='User:Karsten_Theis/Sandbox_1/Globe2/1'>Proteopedia</scene> | <scene name='User:Karsten_Theis/Sandbox_1/Globe2/1'>Proteopedia</scene> | ||
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<jmol> | <jmol> | ||
<jmolLink> | <jmolLink> | ||
| - | <script> var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;} | + | <script> slab on; var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {isosurface translucent @i; delay 0.4;} |
</script> | </script> | ||
<text>Fade surface to invisible</text> | <text>Fade surface to invisible</text> | ||
</jmolLink> | </jmolLink> | ||
</jmol> (basic) | </jmol> (basic) | ||
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| + | |||
| + | |||
| + | |||
| + | == Table == | ||
| + | |||
| + | <table> | ||
| + | <tr> | ||
| + | <td>[http://www.google.com W2]<br> [[Image:Insulin.gif|link=Insulin]]</td> | ||
| + | <td>[[Image:Insulin.gif]]</td> | ||
| + | <td>[[Image:Insulin.gif]]</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>[[Image:Insulin.gif]]</td> | ||
| + | <td>[[Image:Insulin.gif]]</td> | ||
| + | <td>[[Image:Insulin.gif]]</td> | ||
| + | </tr> | ||
| + | <tr> | ||
| + | <td>[[Image:Insulin.gif]]</td> | ||
| + | <td>[[Image:Insulin.gif]]</td> | ||
| + | <td>[[Image:Insulin.gif]]</td> | ||
| + | </tr> | ||
| + | </table> | ||
| + | |||
| + | == References == | ||
| + | <references/> | ||
Current revision
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Here is the molecule. Here is how it can rotate around its single bonds to get a different conformation:
load $pentane; rotate BRANCH [1 2 3 4 0 900 3 2 1 0 1800 0] 10
For large structures, use label "%D" to find numbers of selected atoms.
Metallorganic framework or cubic
(basic)
Table
W2 |
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