4u92
From Proteopedia
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| - | '''Unreleased structure''' | ||
| - | + | ==Crystal structure of a DNA/Ba2+ G-quadruplex containing a water-mediated C-tetrad== | |
| + | <StructureSection load='4u92' size='340' side='right'caption='[[4u92]], [[Resolution|resolution]] 1.50Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[4u92]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4U92 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4U92 FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BA:BARIUM+ION'>BA</scene>, <scene name='pdbligand=CNV:PROPANENITRILE'>CNV</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4u92 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4u92 OCA], [https://pdbe.org/4u92 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4u92 RCSB], [https://www.ebi.ac.uk/pdbsum/4u92 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4u92 ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | We have determined the 1.50 A crystal structure of the DNA decamer, d(CCACNVKGCGTGG) (CNVK, 3-cyanovinylcarbazole), which forms a G-quadruplex structure in the presence of Ba2+. The structure contains several unique features including a bulged nucleotide and the first crystal structure observation of a C-tetrad. The structure reveals that water molecules mediate contacts between the divalent cations and the C-tetrad, allowing Ba2+ ions to occupy adjacent steps in the central ion channel. One ordered Mg2+ facilitates 3'-3' stacking of two quadruplexes in the asymmetric unit, while the bulged nucleotide mediates crystal contacts. Despite the high diffraction limit, the first four nucleotides including the CNVK nucleoside are disordered though they are still involved in crystal packing. This work suggests that the bulky hydrophobic groups may locally influence the formation of non-Watson-Crick structures from otherwise complementary sequences. These observations lead to the intriguing possibility that certain types of DNA damage may act as modulators of G-quadruplex formation. | ||
| - | + | Crystal structure of a DNA/Ba2+ G-quadruplex containing a water-mediated C-tetrad.,Zhang D, Huang T, Lukeman PS, Paukstelis PJ Nucleic Acids Res. 2014 Nov 11. pii: gku1122. PMID:25389267<ref>PMID:25389267</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| + | </div> | ||
| + | <div class="pdbe-citations 4u92" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Synthetic construct]] | ||
| + | [[Category: Huang T]] | ||
| + | [[Category: Lukeman P]] | ||
| + | [[Category: Paukstelis PJ]] | ||
| + | [[Category: Zhang D]] | ||
Current revision
Crystal structure of a DNA/Ba2+ G-quadruplex containing a water-mediated C-tetrad
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