3dwp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:01, 30 October 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of the B-subunit of the AB5 toxin from E. Coli with Neu5Gc==
==Crystal structure of the B-subunit of the AB5 toxin from E. Coli with Neu5Gc==
-
<StructureSection load='3dwp' size='340' side='right' caption='[[3dwp]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
+
<StructureSection load='3dwp' size='340' side='right'caption='[[3dwp]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3dwp]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DWP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DWP FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3dwp]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DWP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DWP FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=NGC:3,5-DIDEOXY-5-[(HYDROXYACETYL)AMINO]-D-GLYCERO-ALPHA-D-GALACTO-NON-2-ULOPYRANOSONIC+ACID'>NGC</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3dwa|3dwa]], [[3dwq|3dwq]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=NGC:3,5-DIDEOXY-5-[(HYDROXYACETYL)AMINO]-D-GLYCERO-ALPHA-D-GALACTO-NON-2-ULOPYRANOSONIC+ACID'>NGC</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">subB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dwp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dwp OCA], [https://pdbe.org/3dwp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dwp RCSB], [https://www.ebi.ac.uk/pdbsum/3dwp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dwp ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dwp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dwp OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dwp RCSB], [http://www.ebi.ac.uk/pdbsum/3dwp PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q3ZTX8_ECOLX Q3ZTX8_ECOLX]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dw/3dwp_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dw/3dwp_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dwp ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 26: Line 28:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 3dwp" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
Line 31: Line 34:
</StructureSection>
</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Beddoe, T]]
+
[[Category: Large Structures]]
-
[[Category: Byres, E]]
+
[[Category: Beddoe T]]
-
[[Category: Chen, X]]
+
[[Category: Byres E]]
-
[[Category: Chong, D C]]
+
[[Category: Chen X]]
-
[[Category: Huang, S]]
+
[[Category: Chong DC]]
-
[[Category: Lofling, J C]]
+
[[Category: Huang S]]
-
[[Category: Paton, A W]]
+
[[Category: Lofling JC]]
-
[[Category: Paton, J C]]
+
[[Category: Paton AW]]
-
[[Category: Rossjohn, J]]
+
[[Category: Paton JC]]
-
[[Category: Smith, D F]]
+
[[Category: Rossjohn J]]
-
[[Category: Talbot, U M]]
+
[[Category: Smith DF]]
-
[[Category: Varki, A]]
+
[[Category: Talbot UM]]
-
[[Category: Varki, N M]]
+
[[Category: Varki A]]
-
[[Category: Wilce, M C.J]]
+
[[Category: Varki NM]]
-
[[Category: Yu, H]]
+
[[Category: Wilce MCJ]]
-
[[Category: Toxin]]
+
[[Category: Yu H]]

Current revision

Crystal structure of the B-subunit of the AB5 toxin from E. Coli with Neu5Gc

PDB ID 3dwp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools