This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3dzo

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:55, 30 August 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of a rhoptry kinase from toxoplasma gondii==
==Crystal structure of a rhoptry kinase from toxoplasma gondii==
-
<StructureSection load='3dzo' size='340' side='right' caption='[[3dzo]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
+
<StructureSection load='3dzo' size='340' side='right'caption='[[3dzo]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3dzo]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Toxoplasma_gondii Toxoplasma gondii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DZO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3DZO FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3dzo]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Toxoplasma_gondii Toxoplasma gondii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DZO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DZO FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3byv|3byv]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">33.m001398 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5811 Toxoplasma gondii])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dzo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dzo OCA], [https://pdbe.org/3dzo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dzo RCSB], [https://www.ebi.ac.uk/pdbsum/3dzo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dzo ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3dzo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dzo OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3dzo RCSB], [http://www.ebi.ac.uk/pdbsum/3dzo PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q06AK3_TOXGO Q06AK3_TOXGO]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dz/3dzo_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dz/3dzo_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dzo ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 26: Line 28:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 3dzo" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Toxoplasma gondii]]
[[Category: Toxoplasma gondii]]
-
[[Category: Ali, A]]
+
[[Category: Ali A]]
-
[[Category: Arrowsmith, C H]]
+
[[Category: Arrowsmith CH]]
-
[[Category: Bochkarev, A]]
+
[[Category: Bochkarev A]]
-
[[Category: Bountra, C]]
+
[[Category: Bountra C]]
-
[[Category: Edwards, A M]]
+
[[Category: Edwards AM]]
-
[[Category: Hui, R]]
+
[[Category: Hui R]]
-
[[Category: Kozieradzki, I]]
+
[[Category: Kozieradzki I]]
-
[[Category: Lam, A]]
+
[[Category: Lam A]]
-
[[Category: Lin, Y H]]
+
[[Category: Lin YH]]
-
[[Category: Ni, S]]
+
[[Category: Ni S]]
-
[[Category: Qiu, W]]
+
[[Category: Qiu W]]
-
[[Category: Ravichandran, M]]
+
[[Category: Ravichandran M]]
-
[[Category: Structural genomic]]
+
[[Category: Schapira M]]
-
[[Category: Schapira, M]]
+
[[Category: Sibley D]]
-
[[Category: Sibley, D]]
+
[[Category: Vedadi M]]
-
[[Category: Vedadi, M]]
+
[[Category: Wasney G]]
-
[[Category: Wasney, G]]
+
[[Category: Wernimont AK]]
-
[[Category: Wernimont, A K]]
+
[[Category: Wilkstrom M]]
-
[[Category: Wilkstrom, M]]
+
-
[[Category: Parasitic disease]]
+
-
[[Category: Rhoptry kinase]]
+
-
[[Category: Sgc]]
+
-
[[Category: Toxoplasma]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal structure of a rhoptry kinase from toxoplasma gondii

PDB ID 3dzo

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3dzo"
Personal tools