User:Wayne Decatur/SecStrFadeIn
From Proteopedia
< User:Wayne Decatur(Difference between revisions)
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==Constructing animation== | ==Constructing animation== | ||
<Structure load='Insert PDB code or filename here' size='350' frame='true' align='right' caption='.' scene='60/607777/Surf_test/1' pspeed='8' /> | <Structure load='Insert PDB code or filename here' size='350' frame='true' align='right' caption='.' scene='60/607777/Surf_test/1' pspeed='8' /> | ||
| - | |||
<scene name='60/609822/1dtg_ball_stick_label/1'>1dtg ball and stick - STARTING SCENE</scene> | <scene name='60/609822/1dtg_ball_stick_label/1'>1dtg ball and stick - STARTING SCENE</scene> | ||
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select protein; | select protein; | ||
echo "To help with observing the patterns,|a tube tracing the backbone is revealed. "; | echo "To help with observing the patterns,|a tube tracing the backbone is revealed. "; | ||
| - | var b = [0.01,0.05,0.1,0.2,0.3,0.4,0. | + | var b = [0.01,0.05,0.1,0.2,0.3,0.4,0.45,0.5, 0.55]; for(var j IN b) {trace @j; delay 0.4;}; |
| + | echo "And fade out the spheres and stick backbone.. "; | ||
| + | var c = [0.55,0.5,0.4,0.2, 0.1,0.05,0.01]; for(var k IN c) {spacefill @k; wireframe @k; delay 0.4;}; | ||
| + | wireframe off; speacefill off; | ||
| + | </script> | ||
| + | <text>Added 3rd part of progression from all atoms to cartoon</text> | ||
| + | </jmolLink> | ||
| + | </jmol> | ||
| + | <jmol> | ||
| + | <jmolLink> | ||
| + | <script> load /wiki/scripts/60/609822/1dtg_ball_stick_label/1.spt; | ||
| + | set echo top center;font echo 12 serif bolditalic;color echo white; echo "Start with all atoms of the protein|as small spheres connected by sticks..."; | ||
| + | delay 4.0; | ||
| + | echo "Next hide all but the backbone atoms|keeping the connections shown..."; | ||
| + | select protein and sidechain; | ||
| + | var a = [1,2,3,4,5,6,7,8]; for(var i IN a) {color translucent @i; delay 0.4;}; | ||
| + | delay 4.0; | ||
| + | echo "The repeating patterns of the secondary structure|elements are starting to be noticeable."; | ||
| + | delay 3.0; | ||
| + | select protein; | ||
| + | echo "To help with observing the patterns,|a tube tracing the backbone is revealed. "; | ||
| + | var b = [0.01,0.05,0.1,0.2,0.3,0.4,0.45,0.5, 0.55]; for(var j IN b) {trace @j; delay 0.4;}; | ||
| + | echo "And fade out the spheres and stick backbone.. "; | ||
| + | var c = [0.55,0.5,0.4,0.2, 0.1,0.05,0.01]; for(var k IN c) {spacefill @k; wireframe @k; delay 0.4;}; | ||
| + | wireframe off; spacefill off; | ||
| + | echo "Finally fade in typical representation and|coloring of the secondary structure. "; | ||
| + | color cartoon structure; | ||
| + | var d = [0.55,0.5,0.4,0.2, 0.1,0.05,0.01]; for(var m IN d) { var n = 0.56 - m;cartoon @n; color cartoon translucent @n; trace @m; delay 0.4;}; | ||
| + | trace off; delay 0.15; color cartoon translucent 0; cartoon on; | ||
</script> | </script> | ||
| - | <text>Added | + | <text>Added 4th part of progression from all atoms to cartoon</text> |
</jmolLink> | </jmolLink> | ||
</jmol> | </jmol> | ||
| Line 86: | Line 113: | ||
== Extras == | == Extras == | ||
{{Link Toggle FancyCartoonHighQualityView}} | {{Link Toggle FancyCartoonHighQualityView}} | ||
| + | |||
== References == | == References == | ||
<references/> | <references/> | ||
| + | |||
| + | ==See Also== | ||
| + | |||
| + | * [[Proteopedia:Cookbook]] | ||
| + | * [[Jmol/Interactivity]] | ||
Current revision
Constructing animation
|
Code in Page Versions To Use as Guides
(basic)
(with fancy cartoons)
Extras
References
