1lrz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:35, 14 February 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1lrz.jpg|left|200px]]
 
-
{{Structure
+
==x-ray crystal structure of staphylococcus aureus femA==
-
|PDB= 1lrz |SIZE=350|CAPTION= <scene name='initialview01'>1lrz</scene>, resolution 2.10&Aring;
+
<StructureSection load='1lrz' size='340' side='right'caption='[[1lrz]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[1lrz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LRZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1LRZ FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
|GENE= FemA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1280 Staphylococcus aureus])
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1lrz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1lrz OCA], [https://pdbe.org/1lrz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1lrz RCSB], [https://www.ebi.ac.uk/pdbsum/1lrz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1lrz ProSAT]</span></td></tr>
-
}}
+
</table>
-
 
+
== Function ==
-
'''x-ray crystal structure of staphylococcus aureus femA'''
+
[https://www.uniprot.org/uniprot/FEMA_STAAU FEMA_STAAU] Catalyzes the formation of the pentaglycine interpeptide bridge, which is characteristic of the S.aureus peptidoglycan. Adds glycines 2 and 3 of the pentaglycine bridge, using glycyl-tRNA(Gly) as donor.
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==Overview==
+
Check<jmol>
-
The latter stages of peptidoglycan biosynthesis in Staphylococci involve the synthesis of a pentaglycine bridge on the epsilon amino group of the pentapeptide lysine side chain. Genetic and biochemical evidence suggest that sequential addition of these glycines is catalyzed by three homologous enzymes, FemX (FmhB), FemA, and FemB. The first protein structure from this family, Staphylococcus aureus FemA, has been solved at 2.1 A resolution by X-ray crystallography. The FemA structure reveals a unique organization of several known protein folds involved in peptide and tRNA binding. The surface of the protein also reveals an L-shaped channel suitable for a peptidoglycan substrate. Analysis of the structural features of this enzyme provides clues to the mechanism of action of S. aureus FemA.
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lr/1lrz_consurf.spt"</scriptWhenChecked>
-
==About this Structure==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
1LRZ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1LRZ OCA].
+
<text>to colour the structure by Evolutionary Conservation</text>
-
 
+
</jmolCheckbox>
-
==Reference==
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1lrz ConSurf].
-
X-ray crystal structure of Staphylococcus aureus FemA., Benson TE, Prince DB, Mutchler VT, Curry KA, Ho AM, Sarver RW, Hagadorn JC, Choi GH, Garlick RL, Structure. 2002 Aug;10(8):1107-15. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12176388 12176388]
+
<div style="clear:both"></div>
-
[[Category: Single protein]]
+
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Staphylococcus aureus]]
[[Category: Staphylococcus aureus]]
-
[[Category: Benson, T.]]
+
[[Category: Benson T]]
-
[[Category: Choi, G.]]
+
[[Category: Choi G]]
-
[[Category: Curry, K.]]
+
[[Category: Curry K]]
-
[[Category: Garlick, R.]]
+
[[Category: Garlick R]]
-
[[Category: Hagadorn, J.]]
+
[[Category: Hagadorn J]]
-
[[Category: Ho, A.]]
+
[[Category: Ho A]]
-
[[Category: Mutchler, V.]]
+
[[Category: Mutchler V]]
-
[[Category: Prince, D.]]
+
[[Category: Prince D]]
-
[[Category: Sarver, R.]]
+
[[Category: Sarver R]]
-
[[Category: multiple anomalous dispersion]]
+
-
[[Category: peptidoglycan]]
+
-
[[Category: staphylococcus aureus]]
+
-
[[Category: x-ray crystallography]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 12:34:26 2008''
+

Current revision

x-ray crystal structure of staphylococcus aureus femA

PDB ID 1lrz

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools