3j8g

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:40, 7 February 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit==
==Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit==
-
<StructureSection load='3j8g' size='340' side='right' caption='[[3j8g]], [[Resolution|resolution]] 5.00&Aring;' scene=''>
+
<SX load='3j8g' size='340' side='right' viewer='molstar' caption='[[3j8g]], [[Resolution|resolution]] 5.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3j8g]] is a 31 chain structure with sequence from [http://en.wikipedia.org/wiki/ ] and [http://en.wikipedia.org/wiki/Escherichia_coli_k12 Escherichia coli k12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3J8G OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3J8G FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3j8g]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3J8G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3J8G FirstGlance]. <br>
-
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3j8g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3j8g OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3j8g RCSB], [http://www.ebi.ac.uk/pdbsum/3j8g PDBsum]</span></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 5&#8491;</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3j8g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3j8g OCA], [https://pdbe.org/3j8g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3j8g RCSB], [https://www.ebi.ac.uk/pdbsum/3j8g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3j8g ProSAT]</span></td></tr>
</table>
</table>
-
<div style="background-color:#fffaf0;">
+
== Function ==
-
== Publication Abstract from PubMed ==
+
[https://www.uniprot.org/uniprot/RL11_ECOLI RL11_ECOLI] This protein binds directly to 23S ribosomal RNA. Forms the L11 stalk, which is mobile in the ribosome, indicating its contribution to the activity of initiation, elongation and release factors.[HAMAP-Rule:MF_00736_B]
-
Many ribosome-interacting GTPases, with proposed functions in ribosome biogenesis, are also implicated in the cellular regulatory coupling between ribosome assembly process and various growth control pathways. EngA is an essential GTPase in bacteria, and intriguingly, it contains two consecutive GTPase domains (GD), being one-of-a-kind among all known GTPases. EngA is required for the 50S subunit maturation. However, its molecular role remains elusive. Here, we present the structure of EngA bound to the 50S subunit. Our data show that EngA binds to the peptidyl transferase center (PTC) and induces dramatic conformational changes on the 50S subunit, which virtually returns the 50S subunit to a state similar to that of the late-stage 50S assembly intermediates. Very interestingly, our data show that the two GDs exhibit a pseudo-two-fold symmetry in the 50S-bound conformation. Our results indicate that EngA recognizes certain forms of the 50S assembly intermediates, and likely facilitates the conformational maturation of the PTC of the 23S rRNA in a direct manner. Furthermore, in a broad context, our data also suggest that EngA might be a sensor of the cellular GTP/GDP ratio, endowed with multiple conformational states, in response to fluctuations in cellular nucleotide pool, to facilitate and regulate ribosome assembly.
+
-
 
+
-
Structural insights into the function of a unique tandem GTPase EngA in bacterial ribosome assembly.,Zhang X, Yan K, Zhang Y, Li N, Ma C, Li Z, Zhang Y, Feng B, Liu J, Sun Y, Xu Y, Lei J, Gao N Nucleic Acids Res. 2014 Nov 11. pii: gku1135. PMID:25389271<ref>PMID:25389271</ref>
+
-
 
+
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+
-
</div>
+
-
== References ==
+
-
<references/>
+
__TOC__
__TOC__
-
</StructureSection>
+
</SX>
-
[[Category: Escherichia coli k12]]
+
[[Category: Escherichia coli K-12]]
-
[[Category: Feng, B]]
+
[[Category: Large Structures]]
-
[[Category: Gao, N]]
+
[[Category: Feng B]]
-
[[Category: Lei, J]]
+
[[Category: Gao N]]
-
[[Category: Li, N]]
+
[[Category: Lei J]]
-
[[Category: Li, Z]]
+
[[Category: Li N]]
-
[[Category: Liu, J]]
+
[[Category: Li Z]]
-
[[Category: Ma, C]]
+
[[Category: Liu J]]
-
[[Category: Sun, Y]]
+
[[Category: Ma C]]
-
[[Category: Xu, Y]]
+
[[Category: Sun Y]]
-
[[Category: Yan, K]]
+
[[Category: Xu Y]]
-
[[Category: Zhang, X]]
+
[[Category: Yan K]]
-
[[Category: Zhang, Y]]
+
[[Category: Zhang X]]
-
[[Category: Der]]
+
[[Category: Zhang Y]]
-
[[Category: Enga]]
+
-
[[Category: Gtpase]]
+
-
[[Category: Ribosome]]
+
-
[[Category: Ribosome assembly]]
+
-
[[Category: Rna folding]]
+
-
[[Category: Yphc]]
+

Current revision

Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit

3j8g, resolution 5.00Å

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools