4ubg

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==Resting state of rat cysteine dioxygenase C93G variant==
==Resting state of rat cysteine dioxygenase C93G variant==
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<StructureSection load='4ubg' size='340' side='right' caption='[[4ubg]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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<StructureSection load='4ubg' size='340' side='right'caption='[[4ubg]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[4ubg]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UBG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4UBG FirstGlance]. <br>
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<table><tr><td colspan='2'>[[4ubg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4UBG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4UBG FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4ubh|4ubh]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cysteine_dioxygenase Cysteine dioxygenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.13.11.20 1.13.11.20] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ubg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ubg OCA], [https://pdbe.org/4ubg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ubg RCSB], [https://www.ebi.ac.uk/pdbsum/4ubg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ubg ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ubg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ubg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ubg RCSB], [http://www.ebi.ac.uk/pdbsum/4ubg PDBsum]</span></td></tr>
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</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CDO1_RAT CDO1_RAT]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Cysteine dioxygenase (CDO) is a non-heme mono-iron enzyme with an unusual posttranslational modification in close proximity to the ferrous iron active site. This modification, a cysteine to tyrosine thioether bond, crosslinks two beta-strands of the beta-barrel. We have investigated its role in catalysis through a combined crystallographic and kinetic approach. The C93G variant lacks the crosslink and shows little structural change from wild-type suggesting that the crosslink does not stabilize an otherwise unfavorable conformation. A pH dependent kinetic study shows that both crosslinked and uncrosslinked CDO are active but the pH optimum decreases with the presence of the crosslink. This result reflects the effect of the thioether bond on the pKa of Y157 and this residue's role in catalysis. At higher pH, kcat is also higher for the crosslinked form extending the pH range of activity. We therefore propose that the crosslink also increases activity by controlling deleterious interactions involving the thiol/ate of C93.
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The Cys-Tyr Crosslink of Cysteine Dioxygenase changes the Optimum pH of Reaction without Structural Change.,Davies CG, Fellner M, Tchesnokov EP, Wilbanks SM, Jameson GN Biochemistry. 2014 Nov 12. PMID:25390690<ref>PMID:25390690</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 4ubg" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Dioxygenase 3D structures|Dioxygenase 3D structures]]
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Cysteine dioxygenase]]
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[[Category: Large Structures]]
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[[Category: Fellner, M]]
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[[Category: Rattus norvegicus]]
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[[Category: Jameson, G N]]
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[[Category: Fellner M]]
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[[Category: Tchesnokov, E P]]
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[[Category: Jameson GN]]
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[[Category: Wilbanks, S M]]
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[[Category: Tchesnokov EP]]
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[[Category: Cupin]]
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[[Category: Wilbanks SM]]
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[[Category: Cysteine to glycine substitution]]
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[[Category: Non-heme mono-iron]]
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[[Category: Oxidoreductase]]
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Current revision

Resting state of rat cysteine dioxygenase C93G variant

PDB ID 4ubg

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