3f56
From Proteopedia
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==The structure of a previously undetected carboxysome shell protein: CsoS1D from Prochlorococcus marinus MED4== | ==The structure of a previously undetected carboxysome shell protein: CsoS1D from Prochlorococcus marinus MED4== | ||
| - | <StructureSection load='3f56' size='340' side='right' caption='[[3f56]], [[Resolution|resolution]] 2.30Å' scene=''> | + | <StructureSection load='3f56' size='340' side='right'caption='[[3f56]], [[Resolution|resolution]] 2.30Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3f56]] is a 6 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3f56]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Prochlorococcus_marinus_subsp._pastoris_str._CCMP1986 Prochlorococcus marinus subsp. pastoris str. CCMP1986]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3F56 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3F56 FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.303Å</td></tr> |
| - | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3f56 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3f56 OCA], [https://pdbe.org/3f56 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3f56 RCSB], [https://www.ebi.ac.uk/pdbsum/3f56 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3f56 ProSAT]</span></td></tr> |
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/CSOSD_PROMP CSOSD_PROMP] Part of the carboxysome shell, a polyhedral inclusion where RuBisCO (ribulose bisphosphate carboxylase, cbbL-cbbS) is sequestered (Probable) (PubMed:22155772). It may control transport of RuBisCO reactants in and out of the carboxysome (Probable). There are estimated to be 6 CsoS1D hexamers per carboxysome (PubMed:22155772).<ref>PMID:22155772</ref> <ref>PMID:19328811</ref> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f5/3f56_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f5/3f56_consurf.spt"</scriptWhenChecked> |
| - | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/ | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> |
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3f56 ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
| + | <div class="pdbe-citations 3f56" style="background-color:#fffaf0;"></div> | ||
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: Prochlorococcus marinus subsp. pastoris str. | + | [[Category: Large Structures]] |
| - | [[Category: Kerfeld | + | [[Category: Prochlorococcus marinus subsp. pastoris str. CCMP1986]] |
| - | [[Category: Klein | + | [[Category: Kerfeld CA]] |
| - | [[Category: Zwart | + | [[Category: Klein MG]] |
| - | + | [[Category: Zwart P]] | |
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Current revision
The structure of a previously undetected carboxysome shell protein: CsoS1D from Prochlorococcus marinus MED4
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