4d7t
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 4d7t is ON HOLD until sometime in the future Authors: Kesters, D., Brams, M., Nys, M., Wijckmans, E., Spurny, R., Voets, T., Tytgat, J., Ulens, C. ...) |
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- | '''Unreleased structure''' | ||
- | + | ==Structure of the SthK Carboxy-Terminal Region in complex with cAMP== | |
+ | <StructureSection load='4d7t' size='340' side='right'caption='[[4d7t]], [[Resolution|resolution]] 2.58Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[4d7t]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Spirochaeta_thermophila_DSM_6192 Spirochaeta thermophila DSM 6192]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4D7T OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4D7T FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.582Å</td></tr> | ||
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CMP:ADENOSINE-3,5-CYCLIC-MONOPHOSPHATE'>CMP</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4d7t FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4d7t OCA], [https://pdbe.org/4d7t PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4d7t RCSB], [https://www.ebi.ac.uk/pdbsum/4d7t PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4d7t ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/E0RR11_SPITD E0RR11_SPITD] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Cyclic nucleotide-sensitive ion channels are molecular pores that open in response to cAMP or cGMP, which are universal second messengers. Binding of a cyclic nucleotide to the carboxyterminal cyclic nucleotide binding domain (CNBD) of these channels is thought to cause a conformational change that promotes channel opening. The C-linker domain, which connects the channel pore to this CNBD, plays an important role in coupling ligand binding to channel opening. Current structural insight into this mechanism mainly derives from X-ray crystal structures of the C-linker/CNBD from hyperpolarization-activated cyclic nucleotide-modulated (HCN) channels. However, these structures reveal little to no conformational changes upon comparison of the ligand-bound and unbound form. In this study, we take advantage of a recently identified prokaryote ion channel, SthK, which has functional properties that strongly resemble cyclic nucleotide-gated (CNG) channels and is activated by cAMP, but not by cGMP. We determined X-ray crystal structures of the C-linker/CNBD of SthK in the presence of cAMP or cGMP. We observe that the structure in complex with cGMP, which is an antagonist, is similar to previously determined HCN channel structures. In contrast, the structure in complex with cAMP, which is an agonist, is in a more open conformation. We observe that the CNBD makes an outward swinging movement, which is accompanied by an opening of the C-linker. This conformation mirrors the open gate structures of the Kv1.2 channel or MthK channel, which suggests that the cAMP-bound C-linker/CNBD from SthK represents an activated conformation. These results provide a structural framework for better understanding cyclic nucleotide modulation of ion channels, including HCN and CNG channels. | ||
- | + | Structure of the SthK Carboxy-Terminal Region Reveals a Gating Mechanism for Cyclic Nucleotide-Modulated Ion Channels.,Kesters D, Brams M, Nys M, Wijckmans E, Spurny R, Voets T, Tytgat J, Kusch J, Ulens C PLoS One. 2015 Jan 27;10(1):e0116369. doi: 10.1371/journal.pone.0116369., eCollection 2015. PMID:25625648<ref>PMID:25625648</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
+ | </div> | ||
+ | <div class="pdbe-citations 4d7t" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
+ | [[Category: Large Structures]] | ||
+ | [[Category: Spirochaeta thermophila DSM 6192]] | ||
+ | [[Category: Brams M]] | ||
+ | [[Category: Kesters D]] | ||
+ | [[Category: Nys M]] | ||
+ | [[Category: Spurny R]] | ||
+ | [[Category: Tytgat J]] | ||
+ | [[Category: Ulens C]] | ||
+ | [[Category: Voets T]] | ||
+ | [[Category: Wijckmans E]] |
Current revision
Structure of the SthK Carboxy-Terminal Region in complex with cAMP
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