3fyr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (01:50, 21 November 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of the sporulation histidine kinase inhibitor Sda from Bacillus subtilis==
==Crystal structure of the sporulation histidine kinase inhibitor Sda from Bacillus subtilis==
-
<StructureSection load='3fyr' size='340' side='right' caption='[[3fyr]], [[Resolution|resolution]] 1.97&Aring;' scene=''>
+
<StructureSection load='3fyr' size='340' side='right'caption='[[3fyr]], [[Resolution|resolution]] 1.97&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3fyr]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FYR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3FYR FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3fyr]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis_str._168 Bacillus subtilis subsp. subtilis str. 168]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FYR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FYR FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.97&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BSU25690, sda ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 Bacillus subtilis])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3fyr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fyr OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3fyr RCSB], [http://www.ebi.ac.uk/pdbsum/3fyr PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fyr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fyr OCA], [https://pdbe.org/3fyr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fyr RCSB], [https://www.ebi.ac.uk/pdbsum/3fyr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fyr ProSAT]</span></td></tr>
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
Line 11: Line 12:
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fy/3fyr_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fy/3fyr_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3fyr ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 25: Line 26:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 3fyr" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacillus subtilis]]
+
[[Category: Bacillus subtilis subsp. subtilis str. 168]]
-
[[Category: Guss, J M]]
+
[[Category: Large Structures]]
-
[[Category: Jacques, D A]]
+
[[Category: Guss JM]]
-
[[Category: King, G F]]
+
[[Category: Jacques DA]]
-
[[Category: Langley, D B]]
+
[[Category: King GF]]
-
[[Category: Streamer, M]]
+
[[Category: Langley DB]]
-
[[Category: Trewhella, J]]
+
[[Category: Streamer M]]
-
[[Category: Alternative initiation]]
+
[[Category: Trewhella J]]
-
[[Category: Helical hairpin]]
+
-
[[Category: Histidine kinase inhibitor]]
+
-
[[Category: Protein kinase inhibitor]]
+
-
[[Category: Sporulation]]
+
-
[[Category: Sporulation regulation]]
+
-
[[Category: Transferase inhibitor]]
+

Current revision

Crystal structure of the sporulation histidine kinase inhibitor Sda from Bacillus subtilis

PDB ID 3fyr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3fyr"
Personal tools