3hnq

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:58, 6 November 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal Structure of Virulence protein STM3117 from Salmonella typhimurium. Northeast Structural Genomics Consortium target id StR274==
==Crystal Structure of Virulence protein STM3117 from Salmonella typhimurium. Northeast Structural Genomics Consortium target id StR274==
-
<StructureSection load='3hnq' size='340' side='right' caption='[[3hnq]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
+
<StructureSection load='3hnq' size='340' side='right'caption='[[3hnq]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3hnq]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_typhimurium Salmonella enterica subsp. enterica serovar typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HNQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HNQ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3hnq]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Salmonella_enterica_subsp._enterica_serovar_Typhimurium Salmonella enterica subsp. enterica serovar Typhimurium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HNQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HNQ FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">STM3117 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=90371 Salmonella enterica subsp. enterica serovar Typhimurium])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hnq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hnq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3hnq RCSB], [http://www.ebi.ac.uk/pdbsum/3hnq PDBsum], [http://www.topsan.org/Proteins/NESGC/3hnq TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hnq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hnq OCA], [https://pdbe.org/3hnq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hnq RCSB], [https://www.ebi.ac.uk/pdbsum/3hnq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hnq ProSAT], [https://www.topsan.org/Proteins/NESGC/3hnq TOPSAN]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/VIR17_SALTY VIR17_SALTY] Is critically involved in promoting the replication of S.typhimurium cells inside host macrophages, suggesting a role in the establishment of bacterial colonization within macrophages. May be involved in the biosynthesis and modification of the peptidoglycan layer of the cell wall.<ref>PMID:16893888</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hn/3hnq_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hn/3hnq_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3hnq ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Salmonella enterica subsp. enterica serovar typhimurium]]
+
[[Category: Large Structures]]
-
[[Category: Acton, T B]]
+
[[Category: Salmonella enterica subsp. enterica serovar Typhimurium]]
-
[[Category: Ciccosanti, C]]
+
[[Category: Acton TB]]
-
[[Category: Foote, E L]]
+
[[Category: Ciccosanti C]]
-
[[Category: Hunt, J F]]
+
[[Category: Foote EL]]
-
[[Category: Janjua, H]]
+
[[Category: Hunt JF]]
-
[[Category: Montelione, G T]]
+
[[Category: Janjua H]]
-
[[Category: Structural genomic]]
+
[[Category: Montelione GT]]
-
[[Category: Rost, B]]
+
[[Category: Rost B]]
-
[[Category: Sahdev, S]]
+
[[Category: Sahdev S]]
-
[[Category: Seetharaman, J]]
+
[[Category: Seetharaman J]]
-
[[Category: Su, M]]
+
[[Category: Su M]]
-
[[Category: Tong, L]]
+
[[Category: Tong L]]
-
[[Category: Xiao, R]]
+
[[Category: Xiao R]]
-
[[Category: Nesg]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Salmonella typhimurium]]
+
-
[[Category: Viral protein]]
+
-
[[Category: Virulence]]
+
-
[[Category: Virulence protein stm3117]]
+

Current revision

Crystal Structure of Virulence protein STM3117 from Salmonella typhimurium. Northeast Structural Genomics Consortium target id StR274

PDB ID 3hnq

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools