3ggl

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:05, 6 September 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==X-Ray Structure of the C-terminal domain (277-440) of Putative chitobiase from Bacteroides thetaiotaomicron. Northeast Structural Genomics Consortium Target BtR324A.==
==X-Ray Structure of the C-terminal domain (277-440) of Putative chitobiase from Bacteroides thetaiotaomicron. Northeast Structural Genomics Consortium Target BtR324A.==
-
<StructureSection load='3ggl' size='340' side='right' caption='[[3ggl]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
+
<StructureSection load='3ggl' size='340' side='right'caption='[[3ggl]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3ggl]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron Bacteroides thetaiotaomicron]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GGL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GGL FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3ggl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_thetaiotaomicron Bacteroides thetaiotaomicron]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GGL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GGL FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3f2z|3f2z]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ggl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ggl OCA], [https://pdbe.org/3ggl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ggl RCSB], [https://www.ebi.ac.uk/pdbsum/3ggl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ggl ProSAT], [https://www.topsan.org/Proteins/NESGC/3ggl TOPSAN]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BT_0865 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=818 Bacteroides thetaiotaomicron])</td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ggl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ggl OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3ggl RCSB], [http://www.ebi.ac.uk/pdbsum/3ggl PDBsum], [http://www.topsan.org/Proteins/NESGC/3ggl TOPSAN]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q8A9F0_BACTN Q8A9F0_BACTN]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gg/3ggl_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gg/3ggl_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3ggl ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Bacteroides thetaiotaomicron]]
[[Category: Bacteroides thetaiotaomicron]]
-
[[Category: Acton, T]]
+
[[Category: Large Structures]]
-
[[Category: Ciccosanti, C]]
+
[[Category: Acton T]]
-
[[Category: Everett, J K]]
+
[[Category: Ciccosanti C]]
-
[[Category: Foote, E L]]
+
[[Category: Everett JK]]
-
[[Category: Hunt, J]]
+
[[Category: Foote EL]]
-
[[Category: Janjua, H]]
+
[[Category: Hunt J]]
-
[[Category: Kuzin, A]]
+
[[Category: Janjua H]]
-
[[Category: Lee, D]]
+
[[Category: Kuzin A]]
-
[[Category: Montelione, G T]]
+
[[Category: Lee D]]
-
[[Category: Structural genomic]]
+
[[Category: Montelione GT]]
-
[[Category: Nair, R]]
+
[[Category: Nair R]]
-
[[Category: Neely, H]]
+
[[Category: Neely H]]
-
[[Category: Rost, B]]
+
[[Category: Rost B]]
-
[[Category: Seetharaman, R]]
+
[[Category: Seetharaman R]]
-
[[Category: Tong, L]]
+
[[Category: Tong L]]
-
[[Category: Xiao, R]]
+
[[Category: Xiao R]]
-
[[Category: Bt_0865]]
+
-
[[Category: Btr324a]]
+
-
[[Category: Nesg]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Q8a9f0_bactn]]
+
-
[[Category: Unknown function]]
+

Current revision

X-Ray Structure of the C-terminal domain (277-440) of Putative chitobiase from Bacteroides thetaiotaomicron. Northeast Structural Genomics Consortium Target BtR324A.

PDB ID 3ggl

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools