2x9x

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:04, 23 October 2024) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
 +
==STRUCTURE OF THE PILUS BACKBONE (RRGB) FROM STREPTOCOCCUS PNEUMONIAE==
==STRUCTURE OF THE PILUS BACKBONE (RRGB) FROM STREPTOCOCCUS PNEUMONIAE==
-
<StructureSection load='2x9x' size='340' side='right' caption='[[2x9x]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
+
<StructureSection load='2x9x' size='340' side='right'caption='[[2x9x]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2x9x]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae_tigr4 Streptococcus pneumoniae tigr4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2X9X OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2X9X FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2x9x]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pneumoniae_TIGR4 Streptococcus pneumoniae TIGR4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2X9X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2X9X FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2x9z|2x9z]], [[2x9w|2x9w]], [[2x9y|2x9y]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2x9x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2x9x OCA], [https://pdbe.org/2x9x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2x9x RCSB], [https://www.ebi.ac.uk/pdbsum/2x9x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2x9x ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2x9x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2x9x OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2x9x RCSB], [http://www.ebi.ac.uk/pdbsum/2x9x PDBsum]</span></td></tr>
+
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
Line 12: Line 12:
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/x9/2x9x_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/x9/2x9x_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2x9x ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 26: Line 26:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 2x9x" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Streptococcus pneumoniae tigr4]]
+
[[Category: Large Structures]]
-
[[Category: Barocchi, M A]]
+
[[Category: Streptococcus pneumoniae TIGR4]]
-
[[Category: Biagini, M]]
+
[[Category: Barocchi MA]]
-
[[Category: Covacci, A]]
+
[[Category: Biagini M]]
-
[[Category: Emolo, C]]
+
[[Category: Covacci A]]
-
[[Category: Ferlenghi, I]]
+
[[Category: Emolo C]]
-
[[Category: Giusti, F]]
+
[[Category: Ferlenghi I]]
-
[[Category: Hilleringmann, M]]
+
[[Category: Giusti F]]
-
[[Category: Koesema, E]]
+
[[Category: Hilleringmann M]]
-
[[Category: Lesley, S]]
+
[[Category: Koesema E]]
-
[[Category: Malito, E]]
+
[[Category: Lesley S]]
-
[[Category: Masignani, V]]
+
[[Category: Malito E]]
-
[[Category: Norais, N]]
+
[[Category: Masignani V]]
-
[[Category: Rappuoli, R]]
+
[[Category: Norais N]]
-
[[Category: Scarselli, M]]
+
[[Category: Rappuoli R]]
-
[[Category: Spraggon, G]]
+
[[Category: Scarselli M]]
-
[[Category: Cell adhesion]]
+
[[Category: Spraggon G]]

Current revision

STRUCTURE OF THE PILUS BACKBONE (RRGB) FROM STREPTOCOCCUS PNEUMONIAE

PDB ID 2x9x

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools