Ribosomal protein L1

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[[Image:RPL1.png|left|200px|thumb|Crystal Structure of Ribosomal protein L1 from ''Thermus thermophilus'' ([[2xg0]], chain C)]]
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<StructureSection load='4f9t' size='350' side='right' scene='' caption='Ribosomal protein L1 from Thermus thermophilus complex with MPD and sulfate (PDB code [[4f9t]])'>
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{{STRUCTURE_2xg0| PDB=2xg0 | SIZE=400| SCENE=Ribosomal_protein_L1/Cv/1 |right|CAPTION=Ribosomal protein L1 from ''Thermus thermophilus'' [[2xg0]], chain C }}
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[[Ribosomal protein L1]] (RPL1) is one of the 34 proteins which belong to the <scene name='Ribosomal_protein_L1/Cv/3'>large 50S subunit</scene> of the prokaryotic ribosome or to the ca. 49 proteins in the large 60S subunit of the eukaryotic ribosome. It is known to bind to 23S or 28S RRNA. In the archaea family it is named L1P. The images at the left and at the right correspond to one representative RPL1, ''i.e.'' the crystal structure of Ribosomal protein L1 from ''Thermus thermophilus'' ([[2xg0]], chain C).
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{{TOC limit|limit=2}}
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[[Ribosomal protein L1]] (RPL1) is one of the 34 proteins which belong to the <scene name='Ribosomal_protein_L1/Cv/3'>large 50S subunit</scene> of the prokaryotic ribosome or to the ca. 49 proteins in the large 60S subunit of the eukaryotic ribosome. It is known to bind to 23S or 28S RRNA<ref>PMID:15659579</ref>. In the archaea family it is named L1P.
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</StructureSection>
== 3D Structures of Ribosomal protein L1 ==
== 3D Structures of Ribosomal protein L1 ==
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**[[2oum]], [[2ov7]] - TtRPL1 domain 1 – ''Thermus thermophilus''<br />
**[[2oum]], [[2ov7]] - TtRPL1 domain 1 – ''Thermus thermophilus''<br />
**[[4f9t]] – TtRPL1 <br />
**[[4f9t]] – TtRPL1 <br />
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**[[1ad2]], [[3tg8]], [[4qgb]], [[4reo]] – TtRPL1 (mutant)<br />
**[[2hw8]], [[1zho]] - TtRPL1+mRNA fragment <br />
**[[2hw8]], [[1zho]] - TtRPL1+mRNA fragment <br />
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**[[1ad2]], [[3tg8]], [[3u42]] – TtRPL1 (mutant)<br />
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**[[5npm]] - TtRPL1 + 23S RNA <br />
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**[[3u4m]], [[3u56]], [[3umy]] - TtRPL1 (mutant) + RNA<br />
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**[[3u4m]], [[3u56]], [[3umy]], [[4qg3]], [[4qvi]] - TtRPL1 (mutant) + RNA<br />
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**[[2vpl]] - TtRPL1 residues 2-68 160-229+mRNA fragment <br />
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**[[2om7]] – TtRPL1+RPS2+RPS12+tRNA+16S RRNA fragments+23S RRNA fragments+EF-G <br />
**[[1u63]] - MjRPL1P+mRNA fragment – ''Methanocaldococcus jannaschii''<br />
**[[1u63]] - MjRPL1P+mRNA fragment – ''Methanocaldococcus jannaschii''<br />
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**[[1i2a]], [[1cjs]] - MjRPL1P<br />
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**[[1i2a]], [[1cjs]], [[4lq4]] - MjRPL1P<br />
**[[1dwu]] - RPL1 – ''Methanococcus thermolithotrophicus''<br />
**[[1dwu]] - RPL1 – ''Methanococcus thermolithotrophicus''<br />
**[[3qoy]] – RPL1 – ''Aquifex aeolicus''<br />
**[[3qoy]] – RPL1 – ''Aquifex aeolicus''<br />
**[[1mzp]] – RPL1P+23S RRNA fragment – ''Sulfolobus acidocaldarius''<br />
**[[1mzp]] – RPL1P+23S RRNA fragment – ''Sulfolobus acidocaldarius''<br />
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**[[2vpl]] - TtRPL1 residues 2-68 160-229+mRNA fragment <br />
 
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**[[2om7]] – TtRPL1+RPS2+RPS12+tRNA+16S RRNA fragments+23S RRNA fragments+EF-G <br />
 
*Ribosomal protein L1 in part of the large ribosomal subunit
*Ribosomal protein L1 in part of the large ribosomal subunit
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**[[487d]] – TtRPL1+RPL2+RPL6+RPL9+RPL11+RPL14+RPL25 - Cryo-EM<br />
**[[487d]] – TtRPL1+RPL2+RPL6+RPL9+RPL11+RPL14+RPL25 - Cryo-EM<br />
**[[2noq]] – yRPL1+RPL11+RPS5+18S RRNA+Cricket paralysis virus IRES RNA<br />
**[[2noq]] – yRPL1+RPL11+RPS5+18S RRNA+Cricket paralysis virus IRES RNA<br />
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**[[3j5s]] - RPL1+RPL5+RPL33+RPS7+16S RRNA + 23S RRNA + p-site tRNA + ETTA – ''Escherichia coli'' - Cryo_EM<br />
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== References ==
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<references/>
[[Category:Topic Page]]
[[Category:Topic Page]]

Current revision

Ribosomal protein L1 from Thermus thermophilus complex with MPD and sulfate (PDB code 4f9t)

Drag the structure with the mouse to rotate

3D Structures of Ribosomal protein L1

Updated on 19-December-2019

References

  1. ↑ Nevskaya N, Tishchenko S, Gabdoulkhakov A, Nikonova E, Nikonov O, Nikulin A, Platonova O, Garber M, Nikonov S, Piendl W. Ribosomal protein L1 recognizes the same specific structural motif in its target sites on the autoregulatory mRNA and 23S rRNA. Nucleic Acids Res. 2005 Jan 19;33(2):478-85. Print 2005. PMID:15659579 doi:33/2/478

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Michal Harel, Alexander Berchansky, Joel L. Sussman

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