This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1mxt

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:25, 14 March 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1mxt.gif|left|200px]]
 
-
{{Structure
+
==Atomic resolution structure of Cholesterol oxidase (Streptomyces sp. SA-COO)==
-
|PDB= 1mxt |SIZE=350|CAPTION= <scene name='initialview01'>1mxt</scene>, resolution 0.95&Aring;
+
<StructureSection load='1mxt' size='340' side='right'caption='[[1mxt]], [[Resolution|resolution]] 0.95&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=FAE:FLAVIN-N7+PROTONATED-ADENINE+DINUCLEOTIDE'>FAE</scene> and <scene name='pdbligand=OXY:OXYGEN MOLECULE'>OXY</scene>
+
<table><tr><td colspan='2'>[[1mxt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_sp. Streptomyces sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MXT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MXT FirstGlance]. <br>
-
|ACTIVITY= [http://en.wikipedia.org/wiki/Cholesterol_oxidase Cholesterol oxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.3.6 1.1.3.6]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 0.95&#8491;</td></tr>
-
|GENE= CHOA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1931 Streptomyces sp.])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAE:FLAVIN-N7+PROTONATED-ADENINE+DINUCLEOTIDE'>FAE</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1mxt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mxt OCA], [https://pdbe.org/1mxt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1mxt RCSB], [https://www.ebi.ac.uk/pdbsum/1mxt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1mxt ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CHOD_STRS0 CHOD_STRS0] Bifunctional enzyme that catalyzes the oxidation of the 3-beta-hydroxy group of cholesterol and the isomerization of the double bond of the resulting product.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mx/1mxt_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1mxt ConSurf].
 +
<div style="clear:both"></div>
-
'''Atomic resolution structure of Cholesterol oxidase (Streptomyces sp. SA-COO)'''
+
==See Also==
-
 
+
*[[Cholesterol oxidase|Cholesterol oxidase]]
-
 
+
__TOC__
-
==Overview==
+
</StructureSection>
-
The crystal structure of cholesterol oxidase, a 56kDa flavoenzyme was anisotropically refined to 0.95A resolution. The final crystallographic R-factor and R(free) value is 11.0% and 13.2%, respectively. The quality of the electron density maps has enabled modeling of alternate conformations for 83 residues in the enzyme, many of which are located in the active site. The additional observed structural features were not apparent in the previous high-resolution structure (1.5A resolution) and have enabled the identification of a narrow tunnel leading directly to the isoalloxazine portion of the FAD prosthetic group. The hydrophobic nature of this narrow tunnel suggests it is the pathway for molecular oxygen to access the isoalloxazine group for the oxidative half reaction. Resolving the alternate conformations in the active site residues provides a model for the dynamics of substrate binding and a potential oxidation triggered gating mechanism involving access to the hydrophobic tunnel. This structure reveals that the NE2 atom of the active site histidine residue, H447, critical to the redox activity of this flavin oxidase, acts as a hydrogen bond donor rather than as hydrogen acceptor. The atomic resolution structure of cholesterol oxidase has revealed the presence of hydrogen atoms, dynamic aspects of the protein and how side-chain conformations are correlated with novel structural features such as the oxygen tunnel. This new structural information has provided us with the opportunity to re-analyze the roles played by specific residues in the mechanism of the enzyme.
+
[[Category: Large Structures]]
-
 
+
[[Category: Streptomyces sp]]
-
==About this Structure==
+
[[Category: Lario PI]]
-
1MXT is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Streptomyces_sp. Streptomyces sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MXT OCA].
+
[[Category: Vrielink A]]
-
 
+
-
==Reference==
+
-
Sub-atomic resolution crystal structure of cholesterol oxidase: what atomic resolution crystallography reveals about enzyme mechanism and the role of the FAD cofactor in redox activity., Lario PI, Sampson N, Vrielink A, J Mol Biol. 2003 Mar 7;326(5):1635-50. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12595270 12595270]
+
-
[[Category: Cholesterol oxidase]]
+
-
[[Category: Single protein]]
+
-
[[Category: Streptomyces sp.]]
+
-
[[Category: Lario, P I.]]
+
-
[[Category: Vrielink, A.]]
+
-
[[Category: FAE]]
+
-
[[Category: OXY]]
+
-
[[Category: SO4]]
+
-
[[Category: atomic resolution]]
+
-
[[Category: flavoenzyme]]
+
-
[[Category: oxidoreductase]]
+
-
[[Category: steroid metabolism]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 12:49:38 2008''
+

Current revision

Atomic resolution structure of Cholesterol oxidase (Streptomyces sp. SA-COO)

PDB ID 1mxt

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1mxt"
Personal tools