This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1mzy

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:50, 14 February 2024) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1mzy.jpg|left|200px]]
 
-
{{Structure
+
==Crystal Structure of Nitrite Reductase==
-
|PDB= 1mzy |SIZE=350|CAPTION= <scene name='initialview01'>1mzy</scene>, resolution 1.46&Aring;
+
<StructureSection load='1mzy' size='340' side='right'caption='[[1mzy]], [[Resolution|resolution]] 1.46&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene> and <scene name='pdbligand=MG:MAGNESIUM ION'>MG</scene>
+
<table><tr><td colspan='2'>[[1mzy]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cereibacter_sphaeroides Cereibacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MZY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MZY FirstGlance]. <br>
-
|ACTIVITY= [http://en.wikipedia.org/wiki/Nitrite_reductase_(NO-forming) Nitrite reductase (NO-forming)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.2.1 1.7.2.1]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.46&#8491;</td></tr>
-
|GENE=
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1mzy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mzy OCA], [https://pdbe.org/1mzy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1mzy RCSB], [https://www.ebi.ac.uk/pdbsum/1mzy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1mzy ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/NIR_CERS5 NIR_CERS5]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mz/1mzy_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1mzy ConSurf].
 +
<div style="clear:both"></div>
-
'''Crystal Structure of Nitrite Reductase'''
+
==See Also==
-
 
+
*[[Nitrite reductase 3D structures|Nitrite reductase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
1MZY is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Rhodobacter_sphaeroides Rhodobacter sphaeroides]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MZY OCA].
+
[[Category: Cereibacter sphaeroides]]
-
[[Category: Nitrite reductase (NO-forming)]]
+
[[Category: Large Structures]]
-
[[Category: Rhodobacter sphaeroides]]
+
[[Category: Guo H]]
-
[[Category: Single protein]]
+
[[Category: Olesen K]]
-
[[Category: Guo, H.]]
+
[[Category: Shapliegh J]]
-
[[Category: Olesen, K.]]
+
[[Category: Sjolin L]]
-
[[Category: Shapliegh, J.]]
+
[[Category: Xue Y]]
-
[[Category: Sjolin, L.]]
+
-
[[Category: Xue, Y.]]
+
-
[[Category: CU]]
+
-
[[Category: MG]]
+
-
[[Category: crystal structure]]
+
-
[[Category: electron transfer]]
+
-
[[Category: gating mechanism]]
+
-
[[Category: mutant m182t]]
+
-
[[Category: nitrite reductase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 12:50:20 2008''
+

Current revision

Crystal Structure of Nitrite Reductase

PDB ID 1mzy

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools