1n8m

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:39, 6 November 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1n8m.jpg|left|200px]]
 
-
{{Structure
+
==Solution structure of Pi4, a four disulfide bridged scorpion toxin active on potassium channels==
-
|PDB= 1n8m |SIZE=350|CAPTION= <scene name='initialview01'>1n8m</scene>
+
<StructureSection load='1n8m' size='340' side='right'caption='[[1n8m]]' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[1n8m]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pandinus_imperator Pandinus imperator]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N8M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1N8M FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 10 models</td></tr>
-
|GENE=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1n8m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1n8m OCA], [https://pdbe.org/1n8m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1n8m RCSB], [https://www.ebi.ac.uk/pdbsum/1n8m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1n8m ProSAT]</span></td></tr>
-
}}
+
</table>
-
 
+
== Function ==
-
'''Solution structure of Pi4, a four disulfide bridged scorpion toxin active on potassium channels'''
+
[https://www.uniprot.org/uniprot/KAX64_PANIM KAX64_PANIM] Potently, completely and reversibly blocks voltage-gated potassium channel Kv1.2/KCNA2 and Shaker B (Sh). Also blocks small conductance (SK) calcium-activated potassium channel (KCNN).<ref>PMID:12919322</ref>
-
 
+
<div style="background-color:#fffaf0;">
-
 
+
== Publication Abstract from PubMed ==
-
==Overview==
+
Pi4 is a short toxin found at very low abundance in the venom of Pandinus imperator scorpions. It is a potent blocker of K(+) channels. Like the other members of the alpha-KTX6 subfamily to which it belongs, it is cross-linked by four disulfide bonds. The synthetic analog (sPi4) and the natural toxin (nPi4) have been obtained by solid-phase synthesis or from scorpion venom, respectively. Analysis of two-dimensional (1)H NMR spectra of nPi4 and sPi4 indicates that both peptides have the same structure. Moreover, electrophysiological recordings of the blocking of Shaker B K(+) channels by sPi4 (K(D) = 8.5 nM) indicate that sPi4 has the same blocking activity of nPi4 (K(D) = 8.0 nM), previously described. The disulfide bonds have been independently determined by NMR and structure calculations, and by Edman-degradation/mass-spectrometry identification of peptides obtained by proteolysis of nPi4. Both approaches indicate that the pairing of the half-cystines is (6)C-(27)C, (12)C-(32)C, (16)C-(34)C, and (22)C-(37)C. The structure of the toxin has been determined by using 705 constraints derived from NMR data on sPi4. The structure, which is well defined, shows the characteristic alpha/beta scaffold of scorpion toxins. It is compared to the structure of the other alpha-KTX6 subfamily members and, in particular, to the structure of maurotoxin, which shows a different pattern of disulfide bridges despite its high degree of sequence identity (76%) with Pi4. The structure of Pi4 and the high amounts of synthetic peptide available, will enable the detailed analysis of the interaction of Pi4 with K(+) channels.
Pi4 is a short toxin found at very low abundance in the venom of Pandinus imperator scorpions. It is a potent blocker of K(+) channels. Like the other members of the alpha-KTX6 subfamily to which it belongs, it is cross-linked by four disulfide bonds. The synthetic analog (sPi4) and the natural toxin (nPi4) have been obtained by solid-phase synthesis or from scorpion venom, respectively. Analysis of two-dimensional (1)H NMR spectra of nPi4 and sPi4 indicates that both peptides have the same structure. Moreover, electrophysiological recordings of the blocking of Shaker B K(+) channels by sPi4 (K(D) = 8.5 nM) indicate that sPi4 has the same blocking activity of nPi4 (K(D) = 8.0 nM), previously described. The disulfide bonds have been independently determined by NMR and structure calculations, and by Edman-degradation/mass-spectrometry identification of peptides obtained by proteolysis of nPi4. Both approaches indicate that the pairing of the half-cystines is (6)C-(27)C, (12)C-(32)C, (16)C-(34)C, and (22)C-(37)C. The structure of the toxin has been determined by using 705 constraints derived from NMR data on sPi4. The structure, which is well defined, shows the characteristic alpha/beta scaffold of scorpion toxins. It is compared to the structure of the other alpha-KTX6 subfamily members and, in particular, to the structure of maurotoxin, which shows a different pattern of disulfide bridges despite its high degree of sequence identity (76%) with Pi4. The structure of Pi4 and the high amounts of synthetic peptide available, will enable the detailed analysis of the interaction of Pi4 with K(+) channels.
-
==About this Structure==
+
Solution structure of Pi4, a short four-disulfide-bridged scorpion toxin specific of potassium channels.,Guijarro JI, M'Barek S, Gomez-Lagunas F, Garnier D, Rochat H, Sabatier JM, Possani L, Delepierre M Protein Sci. 2003 Sep;12(9):1844-54. PMID:12930984<ref>PMID:12930984</ref>
-
1N8M is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1N8M OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
Solution structure of Pi4, a short four-disulfide-bridged scorpion toxin specific of potassium channels., Guijarro JI, M'Barek S, Gomez-Lagunas F, Garnier D, Rochat H, Sabatier JM, Possani L, Delepierre M, Protein Sci. 2003 Sep;12(9):1844-54. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12930984 12930984]
+
</div>
-
[[Category: Single protein]]
+
<div class="pdbe-citations 1n8m" style="background-color:#fffaf0;"></div>
-
[[Category: Barek, S M.]]
+
-
[[Category: Delepierre, M.]]
+
-
[[Category: Garnier, D.]]
+
-
[[Category: Gomez-Lagunas, F.]]
+
-
[[Category: Guijarro, J I.]]
+
-
[[Category: Olamendi-Portugal, T.]]
+
-
[[Category: Possani, L D.]]
+
-
[[Category: Rochat, H.]]
+
-
[[Category: Sabatier, J M.]]
+
-
[[Category: disulfide bridge stabilized alpha beta motif]]
+
-
[[Category: potassium channel blocker]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 12:53:35 2008''
+
==See Also==
 +
*[[Potassium channel toxin 3D structures|Potassium channel toxin 3D structures]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Pandinus imperator]]
 +
[[Category: Delepierre M]]
 +
[[Category: Garnier D]]
 +
[[Category: Gomez-Lagunas F]]
 +
[[Category: Guijarro JI]]
 +
[[Category: M'Barek S]]
 +
[[Category: Olamendi-Portugal T]]
 +
[[Category: Possani LD]]
 +
[[Category: Rochat H]]
 +
[[Category: Sabatier JM]]

Current revision

Solution structure of Pi4, a four disulfide bridged scorpion toxin active on potassium channels

PDB ID 1n8m

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools