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| ==Crystal structure of the N-terminal domain of the secretin XcpQ from Pseudomonas aeruginosa== | | ==Crystal structure of the N-terminal domain of the secretin XcpQ from Pseudomonas aeruginosa== |
- | <StructureSection load='4e9j' size='340' side='right' caption='[[4e9j]], [[Resolution|resolution]] 2.03Å' scene=''> | + | <StructureSection load='4e9j' size='340' side='right'caption='[[4e9j]], [[Resolution|resolution]] 2.03Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[4e9j]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_pao1 Pseudomonas aeruginosa pao1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4E9J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4E9J FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4e9j]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_PAO1 Pseudomonas aeruginosa PAO1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4E9J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4E9J FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.03Å</td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4ec5|4ec5]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">xcpQ, PA3105 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=208964 Pseudomonas aeruginosa PAO1])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4e9j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4e9j OCA], [https://pdbe.org/4e9j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4e9j RCSB], [https://www.ebi.ac.uk/pdbsum/4e9j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4e9j ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4e9j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4e9j OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4e9j RCSB], [http://www.ebi.ac.uk/pdbsum/4e9j PDBsum]</span></td></tr> | + | |
| </table> | | </table> |
- | <div style="background-color:#fffaf0;">
| + | == Function == |
- | == Publication Abstract from PubMed == | + | [https://www.uniprot.org/uniprot/GSPD_PSEAE GSPD_PSEAE] Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. |
- | The type II secretion system (T2SS) is a multi-protein assembly spanning the inner and outer-membrane in Gram-negative bacteria. It is found in almost all pathogenic bacteria where it contributes to virulence, host tissue colonization and infection. The exoproteins are secreted across the outer-membrane via a large translocation channel, the secretin, which typically adopts a dodecameric structure. These secretin channels have large periplasmic N-terminal domains that reach out into the periplasm for communication with the inner-membrane platform and with a pseudopilus structure that spans the periplasm. Here we report the crystal structure of the N-terminal periplasmic domain of the secretin XcpQ from Pseudomonas aeruginosa, revealing a two-lobe dimeric assembly featuring parallel subunits engaging in well-defined interactions at the tips of each lobe. We have employed structure-based engineering of disulfide bridges and native mass spectrometry to show that the periplasmic domain of XcpQ dimerizes in a concentration dependent manner. Validation of these insights in the context of cellular full-length XcpQ and further evaluation of the functionality of disulfide-linked XcpQ establishes that the basic oligomerization unit of XcpQ is a dimer. This is consistent with the notion that the dodecameric secretin assembles as a hexamer of dimers to ensure correct projection of the N-terminal domains into the periplasm. Therefore, our studies provide a key conceptual advancement in understanding the assembly principles and dynamic function of T2SS secretins, and challenge recent studies reporting monomers as the basic subunit of the secretin oligomer.
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- | New insights into the assembly of bacterial secretins: structural studies of the periplasmic domain of XcpQ from Pseudomonas aeruginosa.,Van der Meeren R, Wen Y, Van Gelder P, Tommassen J, Devreese B, Savvides SN J Biol Chem. 2012 Nov 27. PMID:23188826<ref>PMID:23188826</ref>
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- | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
| + | ==See Also== |
- | </div>
| + | *[[General secretion pathway protein 3D structures|General secretion pathway protein 3D structures]] |
- | == References == | + | |
- | <references/>
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Pseudomonas aeruginosa pao1]] | + | [[Category: Large Structures]] |
- | [[Category: Meeren, R Van der]] | + | [[Category: Pseudomonas aeruginosa PAO1]] |
- | [[Category: Homodimer]] | + | [[Category: Van der Meeren R]] |
- | [[Category: Outer membrane]]
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- | [[Category: Periplasmic domain]]
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- | [[Category: Periplasmic space]]
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- | [[Category: Protein transport]]
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- | [[Category: Structural protein]]
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- | [[Category: Xcpq]]
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