This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1oi7

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:41, 13 December 2023) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1oi7.jpg|left|200px]]
 
-
{{Structure
+
==The Crystal Structure of Succinyl-CoA synthetase alpha subunit from Thermus Thermophilus==
-
|PDB= 1oi7 |SIZE=350|CAPTION= <scene name='initialview01'>1oi7</scene>, resolution 1.23&Aring;
+
<StructureSection load='1oi7' size='340' side='right'caption='[[1oi7]], [[Resolution|resolution]] 1.23&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[1oi7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OI7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1OI7 FirstGlance]. <br>
-
|ACTIVITY= [http://en.wikipedia.org/wiki/Succinate--CoA_ligase_(ADP-forming) Succinate--CoA ligase (ADP-forming)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.2.1.5 6.2.1.5]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.23&#8491;</td></tr>
-
|GENE=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1oi7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1oi7 OCA], [https://pdbe.org/1oi7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1oi7 RCSB], [https://www.ebi.ac.uk/pdbsum/1oi7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1oi7 ProSAT], [https://www.topsan.org/Proteins/RSGI/1oi7 TOPSAN]</span></td></tr>
-
}}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/SUCD_THETH SUCD_THETH]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oi/1oi7_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1oi7 ConSurf].
 +
<div style="clear:both"></div>
-
'''THE CRYSTAL STRUCTURE OF SUCCINYL-COA SYNTHETASE ALPHA SUBUNIT FROM THERMUS THERMOPHILUS'''
+
==See Also==
-
 
+
*[[Succinyl-CoA synthetase 3D structures|Succinyl-CoA synthetase 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
1OI7 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OI7 OCA].
+
[[Category: Large Structures]]
-
[[Category: Single protein]]
+
[[Category: Thermus thermophilus HB8]]
-
[[Category: Succinate--CoA ligase (ADP-forming)]]
+
[[Category: Babayeva N]]
-
[[Category: Thermus thermophilus]]
+
[[Category: Kuramitsu S]]
-
[[Category: Babayeva, N.]]
+
[[Category: Kuroishi C]]
-
[[Category: Kuramitsu, S.]]
+
[[Category: Miyano M]]
-
[[Category: Kuroishi, C.]]
+
[[Category: Tahirov TH]]
-
[[Category: Miyano, M.]]
+
[[Category: Takahashi H]]
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
[[Category: Tokunaga Y]]
-
[[Category: Tahirov, T H.]]
+
[[Category: Yokoyama S]]
-
[[Category: Takahashi, H.]]
+
-
[[Category: Tokunaga, Y.]]
+
-
[[Category: Yokoyama, S.]]
+
-
[[Category: ligase]]
+
-
[[Category: riken structural genomics/proteomics initiative]]
+
-
[[Category: rsgi]]
+
-
[[Category: sc]]
+
-
[[Category: structural genomic]]
+
-
[[Category: succinyl-coa synthetase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 13:11:13 2008''
+

Current revision

The Crystal Structure of Succinyl-CoA synthetase alpha subunit from Thermus Thermophilus

PDB ID 1oi7

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools