4v3d

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==The CIDRa domain from HB3var03 PfEMP1 bound to endothelial protein C receptor==
==The CIDRa domain from HB3var03 PfEMP1 bound to endothelial protein C receptor==
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<StructureSection load='4v3d' size='340' side='right' caption='[[4v3d]], [[Resolution|resolution]] 2.65&Aring;' scene=''>
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<StructureSection load='4v3d' size='340' side='right'caption='[[4v3d]], [[Resolution|resolution]] 2.65&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[4v3d]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4V3D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4V3D FirstGlance]. <br>
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<table><tr><td colspan='2'>[[4v3d]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Plasmodium_falciparum_HB3 Plasmodium falciparum HB3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4V3D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4V3D FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PTY:PHOSPHATIDYLETHANOLAMINE'>PTY</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.65&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4v3e|4v3e]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PTY:PHOSPHATIDYLETHANOLAMINE'>PTY</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4v3d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4v3d OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4v3d RCSB], [http://www.ebi.ac.uk/pdbsum/4v3d PDBsum]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4v3d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4v3d OCA], [https://pdbe.org/4v3d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4v3d RCSB], [https://www.ebi.ac.uk/pdbsum/4v3d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4v3d ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/EPCR_HUMAN EPCR_HUMAN] Binds activated protein C. Enhances protein C activation by the thrombin-thrombomodulin complex; plays a role in the protein C pathway controlling blood coagulation.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The PfEMP1 family of surface proteins is central for Plasmodium falciparum virulence and must retain the ability to bind to host receptors while also diversifying to aid immune evasion. The interaction between CIDRalpha1 domains of PfEMP1 and endothelial protein C receptor (EPCR) is associated with severe childhood malaria. We combine crystal structures of CIDRalpha1:EPCR complexes with analysis of 885 CIDRalpha1 sequences, showing that the EPCR-binding surfaces of CIDRalpha1 domains are conserved in shape and bonding potential, despite dramatic sequence diversity. Additionally, these domains mimic features of the natural EPCR ligand and can block this ligand interaction. Using peptides corresponding to the EPCR-binding region, antibodies can be purified from individuals in malaria-endemic regions that block EPCR binding of diverse CIDRalpha1 variants. This highlights the extent to which such a surface protein family can diversify while maintaining ligand-binding capacity and identifies features that should be mimicked in immunogens to prevent EPCR binding.
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Structural Conservation Despite Huge Sequence Diversity Allows EPCR Binding by the PfEMP1 Family Implicated in Severe Childhood Malaria.,Lau CK, Turner L, Jespersen JS, Lowe ED, Petersen B, Wang CW, Petersen JE, Lusingu J, Theander TG, Lavstsen T, Higgins MK Cell Host Microbe. 2014 Dec 3. pii: S1931-3128(14)00423-5. doi:, 10.1016/j.chom.2014.11.007. PMID:25482433<ref>PMID:25482433</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 4v3d" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Higgins, M K]]
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[[Category: Homo sapiens]]
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[[Category: Jespersen, J S]]
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[[Category: Large Structures]]
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[[Category: Lau, C K.Y]]
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[[Category: Plasmodium falciparum HB3]]
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[[Category: Lavstsen, T]]
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[[Category: Higgins MK]]
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[[Category: Lowe, E D]]
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[[Category: Jespersen JS]]
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[[Category: Lusingu, J]]
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[[Category: Lau CKY]]
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[[Category: Petersen, B]]
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[[Category: Lavstsen T]]
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[[Category: Petersen, J E.V]]
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[[Category: Lowe ED]]
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[[Category: Theander, T G]]
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[[Category: Lusingu J]]
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[[Category: Turner, L]]
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[[Category: Petersen B]]
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[[Category: Wang, C W]]
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[[Category: Petersen JEV]]
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[[Category: Cidr domain]]
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[[Category: Theander TG]]
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[[Category: Endothelial protein c receptor]]
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[[Category: Turner L]]
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[[Category: Epcr]]
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[[Category: Wang CW]]
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[[Category: Malaria]]
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[[Category: Pfemp1]]
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[[Category: Signaling protein]]
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Current revision

The CIDRa domain from HB3var03 PfEMP1 bound to endothelial protein C receptor

PDB ID 4v3d

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