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| - | [[Image:1p26.gif|left|200px]] | |
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| - | {{Structure
| + | ==Crystal structure of zinc(II)-d(GGCGCC)2== |
| - | |PDB= 1p26 |SIZE=350|CAPTION= <scene name='initialview01'>1p26</scene>, resolution 2.92Å
| + | <StructureSection load='1p26' size='340' side='right'caption='[[1p26]], [[Resolution|resolution]] 2.92Å' scene=''> |
| - | |SITE=
| + | == Structural highlights == |
| - | |LIGAND= <scene name='pdbligand=ZN:ZINC ION'>ZN</scene> | + | <table><tr><td colspan='2'>[[1p26]] is a 5 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1P26 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1P26 FirstGlance]. <br> |
| - | |ACTIVITY=
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.92Å</td></tr> |
| - | |GENE=
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> |
| - | }}
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1p26 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1p26 OCA], [https://pdbe.org/1p26 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1p26 RCSB], [https://www.ebi.ac.uk/pdbsum/1p26 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1p26 ProSAT]</span></td></tr> |
| - | | + | </table> |
| - | '''Crystal structure of zinc(II)-d(GGCGCC)2''' | + | __TOC__ |
| - | | + | </StructureSection> |
| - | | + | [[Category: Large Structures]] |
| - | ==Overview== | + | [[Category: Delbaere LT]] |
| - | Three novel X-ray crystal structures for the DNA hexamer d(GGCGCC) in the B-form complexed to divalent cobalt, nickel and zinc ions have been determined to a resolution of 2.9-3.0 A. The structures were isomorphous and had five DNA strands and five metal cations per asymmetric unit. In all three cases, divalent metal cations were coordinated only to the terminal guanine residue at the N(7) position, with no metal ions binding to non-terminal guanine positions. Water molecules bound to the metal cations interacted with neighboring guanine residues 3' to the ones to which the cations were coordinated, affecting the propeller twist. Even though DNA occupied only about 35% of the unit cell volume, it is interesting that the few interactions involving the metal cations were sufficient to stabilize the crystal lattice. As well as lending support to the proposal that these metals do not coordinate to B-DNA in a stable manner, the results presented here also extend the crystallographic evidence for this phenomenon to the GGC and CGC sequences for all three metal cations.
| + | [[Category: Labiuk SL]] |
| - | | + | [[Category: Lee JS]] |
| - | ==About this Structure==
| + | |
| - | 1P26 is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1P26 OCA].
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| - | | + | |
| - | ==Reference==
| + | |
| - | Cobalt(II), nickel(II) and zinc(II) do not bind to intra-helical N(7) guanine positions in the B-form crystal structure of d(GGCGCC)., Labiuk SL, Delbaere LT, Lee JS, J Biol Inorg Chem. 2003 Sep;8(7):715-20. Epub 2003 Jul 9. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/14505075 14505075]
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| - | [[Category: Protein complex]]
| + | |
| - | [[Category: Delbaere, L T.]]
| + | |
| - | [[Category: Labiuk, S L.]] | + | |
| - | [[Category: Lee, J S.]] | + | |
| - | [[Category: ZN]] | + | |
| - | [[Category: b-dna]] | + | |
| - | [[Category: zinc binding]] | + | |
| - | | + | |
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 13:18:50 2008''
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