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2lsm

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Solution structure of gpFI C-terminal domain

Structural highlights

2lsm is a 1 chain structure with sequence from Escherichia virus Lambda. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	Solution NMR
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

FI_LAMBD Stimulates the interaction of procapsid with the terminase-DNA complex, thereby increasing the overall rate of DNA packaging. Before packaging, it likely coats the surface of the procapsid through binding mediated by C-terminal domain. FI presumably dissociates from the capsid once it inflates upon DNA packaging, and is not present in the mature virion.^[1]

Publication Abstract from PubMed

One of the final steps in the morphogenetic pathway of phage lambda is the packaging of a single genome into a preformed empty head structure. In addition to the terminase enzyme, the packaging chaperone, FI protein (gpFI), is required for efficient DNA packaging. In this study, we demonstrate an interaction between gpFI and the major head protein, gpE. Amino acid substitutions in gpFI that reduced the strength of this interaction also decreased the biological activity of gpFI, implying that this head binding activity is essential for the function of gpFI. We also show that gpFI is a two-domain protein, and the C-terminal domain is responsible for the head binding activity. Using nuclear magnetic resonance spectroscopy, we determined the three-dimensional structure of the C-terminal domain and characterized the helical nature of the N-terminal domain. Through structural comparisons, we were able to identify two previously unannotated prophage-encoded proteins with tertiary structures similar to gpFI, although they lack significant pairwise sequence identity. Sequence analysis of these diverse homologues led us to identify related proteins in a variety of myo- and siphophages, revealing that gpFI function has a more highly conserved role in phage morphogenesis than was previously appreciated. Finally, we present a novel model for the mechanism of gpFI chaperone activity in the DNA packaging reaction of phage lambda.

Structural and biochemical characterization of phage lambda FI protein (gpFI) reveals a novel mechanism of DNA packaging chaperone activity.,Popovic A, Wu B, Arrowsmith CH, Edwards AM, Davidson AR, Maxwell KL J Biol Chem. 2012 Sep 14;287(38):32085-95. doi: 10.1074/jbc.M112.378349. Epub, 2012 Jul 16. PMID:22801427^[2]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Murialdo H, Tzamtzis D, Berrú M, Fife WL, Becker A. Mutations in the terminase genes of bacteriophage lambda that bypass the necessity for FI. Mol Microbiol. 1997 Jun;24(5):937-52. PMID:9220002 doi:10.1046/j.1365-2958.1997.4011769.x
↑ Popovic A, Wu B, Arrowsmith CH, Edwards AM, Davidson AR, Maxwell KL. Structural and biochemical characterization of phage lambda FI protein (gpFI) reveals a novel mechanism of DNA packaging chaperone activity. J Biol Chem. 2012 Sep 14;287(38):32085-95. doi: 10.1074/jbc.M112.378349. Epub, 2012 Jul 16. PMID:22801427 doi:10.1074/jbc.M112.378349

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2lsm"

@@ Line 1: / Line 1: @@
 ==Solution structure of gpFI C-terminal domain==
-<StructureSection load='2lsm' size='340' side='right' caption='[[2lsm]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+<StructureSection load='2lsm' size='340' side='right'caption='[[2lsm]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2lsm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_lambda Enterobacteria phage lambda]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LSM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2LSM FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2lsm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_Lambda Escherichia virus Lambda]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LSM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2LSM FirstGlance]. <br>
-</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">FI ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10710 Enterobacteria phage lambda])</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2lsm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lsm OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2lsm RCSB], [http://www.ebi.ac.uk/pdbsum/2lsm PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2lsm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lsm OCA], [https://pdbe.org/2lsm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2lsm RCSB], [https://www.ebi.ac.uk/pdbsum/2lsm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2lsm ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/FI_LAMBD FI_LAMBD] Stimulates the interaction of procapsid with the terminase-DNA complex, thereby increasing the overall rate of DNA packaging. Before packaging, it likely coats the surface of the procapsid through binding mediated by C-terminal domain. FI presumably dissociates from the capsid once it inflates upon DNA packaging, and is not present in the mature virion.<ref>PMID:9220002</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 14: / Line 17: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 2lsm" style="background-color:#fffaf0;"></div>
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Enterobacteria phage lambda]]
+[[Category: Escherichia virus Lambda]]
-[[Category: Davidson, A R]]
+[[Category: Large Structures]]
-[[Category: Edwards, A M]]
+[[Category: Davidson AR]]
-[[Category: Maxwell, K L]]
+[[Category: Edwards AM]]
-[[Category: Popovic, A]]
+[[Category: Maxwell KL]]
-[[Category: Wu, B]]
+[[Category: Popovic A]]
-[[Category: Chaperone]]
+[[Category: Wu B]]
-[[Category: Dna packaging]]
-[[Category: Gene product fi]]
-[[Category: Phage lambda]]

2lsm

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Current revision

Solution structure of gpFI C-terminal domain

Structural highlights

Function

Publication Abstract from PubMed

References

Contents

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