This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2xvk
From Proteopedia
(Difference between revisions)
| (4 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | == | + | |
| - | <StructureSection load='2xvk' size='340' side='right' caption='[[2xvk]], [[Resolution|resolution]] 2.50Å' scene=''> | + | ==crystal structure of alpha-xylosidase (GH31) from Cellvibrio japonicus in complex with 5-fluoro-alpha-D-xylopyranosyl fluoride== |
| + | <StructureSection load='2xvk' size='340' side='right'caption='[[2xvk]], [[Resolution|resolution]] 2.50Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2xvk]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2xvk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cellvibrio_japonicus Cellvibrio japonicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XVK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XVK FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FFX:(2R,3S,5R,6S)-2,6-DIFLUOROOXANE-3,4,5-TRIOL'>FFX</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.503Å</td></tr> |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FFX:(2R,3S,5R,6S)-2,6-DIFLUOROOXANE-3,4,5-TRIOL'>FFX</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr> | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xvk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xvk OCA], [https://pdbe.org/2xvk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xvk RCSB], [https://www.ebi.ac.uk/pdbsum/2xvk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xvk ProSAT]</span></td></tr> |
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/B3PBD9_CELJU B3PBD9_CELJU] | ||
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
| Line 15: | Line 18: | ||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
</div> | </div> | ||
| + | <div class="pdbe-citations 2xvk" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
| - | *[[Xylosidase|Xylosidase]] | + | *[[Xylosidase 3D structures|Xylosidase 3D structures]] |
== References == | == References == | ||
<references/> | <references/> | ||
| Line 23: | Line 27: | ||
</StructureSection> | </StructureSection> | ||
[[Category: Cellvibrio japonicus]] | [[Category: Cellvibrio japonicus]] | ||
| - | [[Category: Brumer | + | [[Category: Large Structures]] |
| - | [[Category: Davies | + | [[Category: Brumer H]] |
| - | [[Category: Gilbert | + | [[Category: Davies GJ]] |
| - | [[Category: Ibatullin | + | [[Category: Gilbert HJ]] |
| - | [[Category: Izumi | + | [[Category: Ibatullin F]] |
| - | [[Category: Larsbrink | + | [[Category: Izumi A]] |
| - | [[Category: Nakhai | + | [[Category: Larsbrink J]] |
| - | + | [[Category: Nakhai A]] | |
| - | + | ||
Current revision
crystal structure of alpha-xylosidase (GH31) from Cellvibrio japonicus in complex with 5-fluoro-alpha-D-xylopyranosyl fluoride
| |||||||||||
