3lyy
From Proteopedia
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==Crystal structure of the MucBP domain of the adhesion protein PEPE_0118 from Pediococcus pentosaceus. Northeast Structural Genomics Consortium target id PtR41A== | ==Crystal structure of the MucBP domain of the adhesion protein PEPE_0118 from Pediococcus pentosaceus. Northeast Structural Genomics Consortium target id PtR41A== | ||
| - | <StructureSection load='3lyy' size='340' side='right' caption='[[3lyy]], [[Resolution|resolution]] 1.90Å' scene=''> | + | <StructureSection load='3lyy' size='340' side='right'caption='[[3lyy]], [[Resolution|resolution]] 1.90Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3lyy]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3lyy]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pediococcus_pentosaceus_ATCC_25745 Pediococcus pentosaceus ATCC 25745]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LYY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3LYY FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9Å</td></tr> |
| - | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3lyy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lyy OCA], [https://pdbe.org/3lyy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3lyy RCSB], [https://www.ebi.ac.uk/pdbsum/3lyy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3lyy ProSAT]</span></td></tr> |
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q03HU7_PEDPA Q03HU7_PEDPA] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ly/3lyy_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ly/3lyy_consurf.spt"</scriptWhenChecked> |
| - | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/ | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> |
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
</jmolCheckbox> | </jmolCheckbox> | ||
| - | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3lyy ConSurf]. |
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: Pediococcus pentosaceus]] | + | [[Category: Large Structures]] |
| - | [[Category: Acton | + | [[Category: Pediococcus pentosaceus ATCC 25745]] |
| - | [[Category: Baran | + | [[Category: Acton TB]] |
| - | [[Category: Cunningham | + | [[Category: Baran MC]] |
| - | [[Category: Hunt | + | [[Category: Cunningham K]] |
| - | [[Category: Janjua | + | [[Category: Hunt JF]] |
| - | [[Category: Lew | + | [[Category: Janjua H]] |
| - | [[Category: Liu | + | [[Category: Lew S]] |
| - | [[Category: Montelione | + | [[Category: Liu J]] |
| - | + | [[Category: Montelione GT]] | |
| - | [[Category: Owens | + | [[Category: Owens L]] |
| - | [[Category: Seetharaman | + | [[Category: Seetharaman J]] |
| - | [[Category: Tong | + | [[Category: Tong L]] |
| - | [[Category: Wang | + | [[Category: Wang D]] |
| - | [[Category: Xiao | + | [[Category: Xiao R]] |
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Current revision
Crystal structure of the MucBP domain of the adhesion protein PEPE_0118 from Pediococcus pentosaceus. Northeast Structural Genomics Consortium target id PtR41A
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Categories: Large Structures | Pediococcus pentosaceus ATCC 25745 | Acton TB | Baran MC | Cunningham K | Hunt JF | Janjua H | Lew S | Liu J | Montelione GT | Owens L | Seetharaman J | Tong L | Wang D | Xiao R
