This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3loi

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (16:24, 1 November 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structures of Cupin superfamily BbDUF985 from Branchiostoma belcheri tsingtauense in the apo and GDP-bound forms==
==Crystal structures of Cupin superfamily BbDUF985 from Branchiostoma belcheri tsingtauense in the apo and GDP-bound forms==
-
<StructureSection load='3loi' size='340' side='right' caption='[[3loi]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
+
<StructureSection load='3loi' size='340' side='right'caption='[[3loi]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3loi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Branchiostoma_belcheri_tsingtauense Branchiostoma belcheri tsingtauense]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LOI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3LOI FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3loi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Branchiostoma_belcheri_tsingtauense Branchiostoma belcheri tsingtauense]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LOI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3LOI FirstGlance]. <br>
-
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3loi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3loi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3loi RCSB], [http://www.ebi.ac.uk/pdbsum/3loi PDBsum]</span></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3loi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3loi OCA], [https://pdbe.org/3loi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3loi RCSB], [https://www.ebi.ac.uk/pdbsum/3loi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3loi ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q6WRH7_BRABE Q6WRH7_BRABE]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lo/3loi_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lo/3loi_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
-
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3loi ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Branchiostoma belcheri tsingtauense]]
[[Category: Branchiostoma belcheri tsingtauense]]
-
[[Category: Chen, Y]]
+
[[Category: Large Structures]]
-
[[Category: Du, Y]]
+
[[Category: Chen Y]]
-
[[Category: He, Y X]]
+
[[Category: Du Y]]
-
[[Category: Saren, G]]
+
[[Category: He Y-X]]
-
[[Category: Zhang, S C]]
+
[[Category: Saren G]]
-
[[Category: Zhang, X]]
+
[[Category: Zhang S-C]]
-
[[Category: Zou, C Z]]
+
[[Category: Zhang X]]
-
[[Category: Beta barrel]]
+
[[Category: Zou CZ]]
-
[[Category: Unknown function]]
+

Current revision

Crystal structures of Cupin superfamily BbDUF985 from Branchiostoma belcheri tsingtauense in the apo and GDP-bound forms

PDB ID 3loi

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools