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3mxl

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Crystal structure of nitrososynthase from Micromonospora carbonacea var. africana

Structural highlights

3mxl is a 4 chain structure with sequence from Micromonospora sp. ATCC 39149. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	X-ray diffraction, Resolution 3.15Å
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

B5APQ9_MICS3

Publication Abstract from PubMed

Everninomicin is a highly modified octasaccharide that belongs to the orthosomycin family of antibiotics and possesses potent Gram-positive antibiotic activity, including broad-spectrum efficacy against multidrug resistant enterococci and Staphylococcus aureus. Among its distinctive structural features is a nitro sugar, l-evernitrose, analogues of which decorate a variety of natural products. Recently, we identified a nitrososynthase enzyme encoded by orf36 from Micromonospora carbonacea var. africana that mediates the flavin-dependent double oxidation of synthetically generated thymidine diphosphate (TDP)-l-epi-vancosamine to the corresponding nitroso sugar. Herein, we utilize a five-enzyme in vitro pathway both to verify that ORF36 catalyzes oxidation of biogenic TDP-l-epi-vancosamine and to determine whether ORF36 exhibits catalytic competence for any of its biosynthetic progenitors, which are candidate substrates for nitrososynthases in vivo. Progenitors solely undergo single-oxidation reactions and terminate in the hydroxylamine oxidation state. Performing the in vitro reactions in the presence of (18)O(2) establishes that molecular oxygen, rather than oxygen from water, is incorporated into ORF36-generated intermediates and products and identifies an off-pathway product that correlates with the oxidation product of a progenitor substrate. The 3.15 A resolution X-ray crystal structure of ORF36 reveals a tetrameric enzyme that shares a fold with acyl-CoA dehydrogenases and class D flavin-containing monooxygenases, including the nitrososynthase KijD3. However, ORF36 and KijD3 have unusually open active sites in comparison to these related enzymes. Taken together, these studies map substrate determinants and allow the proposal of a minimal monooxygenase mechanism for amino sugar oxidation by ORF36.

Structure and mechanism of ORF36, an amino sugar oxidizing enzyme in everninomicin biosynthesis .,Vey JL, Al-Mestarihi A, Hu Y, Funk MA, Bachmann BO, Iverson TM Biochemistry. 2010 Nov 2;49(43):9306-17. PMID:20866105^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Vey JL, Al-Mestarihi A, Hu Y, Funk MA, Bachmann BO, Iverson TM. Structure and mechanism of ORF36, an amino sugar oxidizing enzyme in everninomicin biosynthesis . Biochemistry. 2010 Nov 2;49(43):9306-17. PMID:20866105 doi:10.1021/bi101336u

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3mxl"

Categories: Large Structures | Micromonospora sp. ATCC 39149 | Iverson TM | Vey JL

@@ Line 1: / Line 1: @@
 ==Crystal structure of nitrososynthase from Micromonospora carbonacea var. africana==
-<StructureSection load='3mxl' size='340' side='right' caption='[[3mxl]], [[Resolution|resolution]] 3.15&Aring;' scene=''>
+<StructureSection load='3mxl' size='340' side='right'caption='[[3mxl]], [[Resolution|resolution]] 3.15&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3mxl]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Micromonospora_carbonacea Micromonospora carbonacea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MXL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3MXL FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3mxl]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Micromonospora_sp._ATCC_39149 Micromonospora sp. ATCC 39149]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MXL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MXL FirstGlance]. <br>
-</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ORF36 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=47853 Micromonospora carbonacea])</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.15&#8491;</td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3mxl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mxl OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3mxl RCSB], [http://www.ebi.ac.uk/pdbsum/3mxl PDBsum]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mxl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mxl OCA], [https://pdbe.org/3mxl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mxl RCSB], [https://www.ebi.ac.uk/pdbsum/3mxl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mxl ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/B5APQ9_MICS3 B5APQ9_MICS3]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 14: / Line 17: @@
 From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 </div>
+<div class="pdbe-citations 3mxl" style="background-color:#fffaf0;"></div>
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Micromonospora carbonacea]]
+[[Category: Large Structures]]
-[[Category: Iverson, T M]]
+[[Category: Micromonospora sp. ATCC 39149]]
-[[Category: Vey, J L]]
+[[Category: Iverson TM]]
-[[Category: Acyl-coa dehydrogenase]]
+[[Category: Vey JL]]
-[[Category: Flavin monooxygenase]]
-[[Category: Nitrososynthase]]
-[[Category: Oxidoreductase]]

3mxl

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Current revision

Crystal structure of nitrososynthase from Micromonospora carbonacea var. africana

Structural highlights

Function

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

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