This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3p13

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (16:59, 1 November 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Complex Structure of D-ribose Pyranase Sa240 with D-ribose==
==Complex Structure of D-ribose Pyranase Sa240 with D-ribose==
-
<StructureSection load='3p13' size='340' side='right' caption='[[3p13]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
+
<StructureSection load='3p13' size='340' side='right'caption='[[3p13]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3p13]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3P13 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3P13 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3p13]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus_NCTC_8325 Staphylococcus aureus subsp. aureus NCTC 8325]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3P13 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3P13 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=RIP:RIBOSE(PYRANOSE+FORM)'>RIP</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.35&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3p12|3p12]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=RIP:RIBOSE(PYRANOSE+FORM)'>RIP</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">rbsD, SAOUHSC_00240 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1280 Staphylococcus aureus])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3p13 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3p13 OCA], [https://pdbe.org/3p13 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3p13 RCSB], [https://www.ebi.ac.uk/pdbsum/3p13 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3p13 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3p13 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3p13 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3p13 RCSB], [http://www.ebi.ac.uk/pdbsum/3p13 PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/RBSD_STAA8 RBSD_STAA8] Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.[HAMAP-Rule:MF_01661]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 16: Line 18:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 3p13" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Staphylococcus aureus]]
+
[[Category: Large Structures]]
-
[[Category: Wang, L]]
+
[[Category: Staphylococcus aureus subsp. aureus NCTC 8325]]
-
[[Category: Wu, M]]
+
[[Category: Wang L]]
-
[[Category: Zang, J]]
+
[[Category: Wu M]]
-
[[Category: Carbohydrate metabolism]]
+
[[Category: Zang J]]
-
[[Category: D-ribose pyranase]]
+
-
[[Category: Isomerase]]
+
-
[[Category: Rbsd]]
+
-
[[Category: Sa240]]
+

Current revision

Complex Structure of D-ribose Pyranase Sa240 with D-ribose

PDB ID 3p13

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools