This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3rop

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (17:18, 1 November 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of human CD38 in complex with compound CZ-50b==
==Crystal structure of human CD38 in complex with compound CZ-50b==
-
<StructureSection load='3rop' size='340' side='right' caption='[[3rop]], [[Resolution|resolution]] 1.94&Aring;' scene=''>
+
<StructureSection load='3rop' size='340' side='right'caption='[[3rop]], [[Resolution|resolution]] 1.94&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3rop]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ROP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ROP FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3rop]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ROP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ROP FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=50A:2-DEOXY-2-FLUORO-5-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE'>50A</scene>, <scene name='pdbligand=NCA:NICOTINAMIDE'>NCA</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.94&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1yh3|1yh3]], [[3rok|3rok]], [[3rom|3rom]], [[3roq|3roq]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=50A:2-DEOXY-2-FLUORO-5-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE'>50A</scene>, <scene name='pdbligand=NCA:NICOTINAMIDE'>NCA</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CD38 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3rop FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rop OCA], [https://pdbe.org/3rop PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3rop RCSB], [https://www.ebi.ac.uk/pdbsum/3rop PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3rop ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/NAD(+)_nucleosidase NAD(+) nucleosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.5 3.2.2.5] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3rop FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3rop OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3rop RCSB], [http://www.ebi.ac.uk/pdbsum/3rop PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CD38_HUMAN CD38_HUMAN] Synthesizes cyclic ADP-ribose, a second messenger for glucose-induced insulin secretion. Also has cADPr hydrolase activity. Also moonlights as a receptor in cells of the immune system.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 17: Line 18:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 3rop" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
Line 25: Line 27:
</StructureSection>
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Hao, Q]]
+
[[Category: Large Structures]]
-
[[Category: Lee, H C]]
+
[[Category: Hao Q]]
-
[[Category: Zhang, H]]
+
[[Category: Lee HC]]
-
[[Category: Adp-ribosyl cyclase]]
+
[[Category: Zhang H]]
-
[[Category: Calcium signaling]]
+
-
[[Category: Cd38]]
+
-
[[Category: Covalent intermediate]]
+
-
[[Category: Cyclic adp-ribose]]
+
-
[[Category: Cz-50b]]
+
-
[[Category: Hydrolase-hydrolase inhibitor complex]]
+
-
[[Category: Inhibitory compound]]
+
-
[[Category: X-crystallography]]
+

Current revision

Crystal structure of human CD38 in complex with compound CZ-50b

PDB ID 3rop

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools