3qj0
From Proteopedia
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==Crystal Structure of BoNT/A LC complexed with Hydroxamate-based Inhibitor PT-3== | ==Crystal Structure of BoNT/A LC complexed with Hydroxamate-based Inhibitor PT-3== | ||
- | <StructureSection load='3qj0' size='340' side='right' caption='[[3qj0]], [[Resolution|resolution]] 2.30Å' scene=''> | + | <StructureSection load='3qj0' size='340' side='right'caption='[[3qj0]], [[Resolution|resolution]] 2.30Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[3qj0]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3qj0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_botulinum_A_str._Hall Clostridium botulinum A str. Hall]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QJ0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QJ0 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=QI3:(4R)-4-(4-CHLOROPHENOXY)-1-[(4-CHLOROPHENYL)SULFONYL]-N-HYDROXY-L-PROLINAMIDE'>QI3</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.301Å</td></tr> |
- | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=QI3:(4R)-4-(4-CHLOROPHENOXY)-1-[(4-CHLOROPHENYL)SULFONYL]-N-HYDROXY-L-PROLINAMIDE'>QI3</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | |
- | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qj0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qj0 OCA], [https://pdbe.org/3qj0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qj0 RCSB], [https://www.ebi.ac.uk/pdbsum/3qj0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qj0 ProSAT]</span></td></tr> | |
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- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
- | <div style="background-color:#fffaf0;"> | ||
- | == Publication Abstract from PubMed == | ||
- | Neurotoxins synthesized by Clostridium botulinum bacteria (BoNT), the etiological agent of human botulism, are extremely toxic proteins making them high-risk agents for bioterrorism. Small molecule inhibitor development has been focused on the light chain zinc-dependent metalloprotease domain of the neurotoxin, an effort that has been hampered by its relatively flexible active site. Developed in concert with structure-activity relationship studies, the X-ray crystal structures of the complex of BoNT serotype A light chain (BoNT/A LC) with three different micromolar potency hydroxamate-based inhibitors are reported here for the first time. Comparison with an unliganded BoNT/A LC structure reveals significant changes in the active site as a result of binding by the unique inhibitor scaffolds. The 60/70 loop at the opening of the active site pocket undergoes the largest conformational change, presumably through an induced-fit mechanism, resulting in the most compact catalytic pocket observed in all known BoNT/A LC structures. | ||
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- | Structural Characterization of Three Novel Hydroxamate-based Zinc Chelating Inhibitors of the C. botulinum Serotype A Neurotoxin Light Chain Metalloprotease Reveals a Compact Binding Site Resulting from 60/70 Loop Flexibility.,Thompson AA, Jiao GS, Kim S, Thai A, Cregar-Hernandez L, Margosiak SA, Johnson AT, Han GW, O'Malley S, Stevens RC Biochemistry. 2011 Mar 24. PMID:21434688<ref>PMID:21434688</ref> | ||
- | + | ==See Also== | |
- | + | *[[Botulinum neurotoxin 3D structures|Botulinum neurotoxin 3D structures]] | |
- | == | + | |
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: | + | [[Category: Clostridium botulinum A str. Hall]] |
- | [[Category: | + | [[Category: Large Structures]] |
- | [[Category: Han | + | [[Category: Han GW]] |
- | [[Category: Stevens | + | [[Category: Stevens RC]] |
- | [[Category: Thompson | + | [[Category: Thompson AA]] |
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Current revision
Crystal Structure of BoNT/A LC complexed with Hydroxamate-based Inhibitor PT-3
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