This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3vwr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:09, 15 November 2023) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of 6-aminohexanoate-dimer hydrolase S112A/G181D/R187G/H266N/D370Y mutant complexd with 6-aminohexanoate==
==Crystal structure of 6-aminohexanoate-dimer hydrolase S112A/G181D/R187G/H266N/D370Y mutant complexd with 6-aminohexanoate==
-
<StructureSection load='3vwr' size='340' side='right' caption='[[3vwr]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
+
<StructureSection load='3vwr' size='340' side='right'caption='[[3vwr]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3vwr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Flask Flask]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VWR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3VWR FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3vwr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Flavobacterium_sp._KI723T1 Flavobacterium sp. KI723T1] and [https://en.wikipedia.org/wiki/Paenarthrobacter_ureafaciens Paenarthrobacter ureafaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VWR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VWR FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACA:6-AMINOHEXANOIC+ACID'>ACA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1wyb|1wyb]], [[3vwl|3vwl]], [[3vwm|3vwm]], [[3vwn|3vwn]], [[3vwp|3vwp]], [[3vwq|3vwq]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACA:6-AMINOHEXANOIC+ACID'>ACA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">nylB, nylB' ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=261 FLASK])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vwr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vwr OCA], [https://pdbe.org/3vwr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vwr RCSB], [https://www.ebi.ac.uk/pdbsum/3vwr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vwr ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/6-aminohexanoate-dimer_hydrolase 6-aminohexanoate-dimer hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.46 3.5.1.46] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vwr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vwr OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3vwr RCSB], [http://www.ebi.ac.uk/pdbsum/3vwr PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/NYLB2_FLASK NYLB2_FLASK] Involved in nylon oligomer degradation.<ref>PMID:6389532</ref> <ref>PMID:6646204</ref> [https://www.uniprot.org/uniprot/NYLB_FLASK NYLB_FLASK]
==See Also==
==See Also==
-
*[[6-aminohexanoate-dimer hydrolase|6-aminohexanoate-dimer hydrolase]]
+
*[[6-aminohexanoate-dimer hydrolase 3D structures|6-aminohexanoate-dimer hydrolase 3D structures]]
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: 6-aminohexanoate-dimer hydrolase]]
+
[[Category: Flavobacterium sp. KI723T1]]
-
[[Category: Flask]]
+
[[Category: Large Structures]]
-
[[Category: Higuchi, Y]]
+
[[Category: Paenarthrobacter ureafaciens]]
-
[[Category: Kawashima, Y]]
+
[[Category: Higuchi Y]]
-
[[Category: Negoro, S]]
+
[[Category: Kawashima Y]]
-
[[Category: Shibata, N]]
+
[[Category: Negoro S]]
-
[[Category: Hydrolase]]
+
[[Category: Shibata N]]
-
[[Category: Nylon degradation]]
+

Current revision

Crystal structure of 6-aminohexanoate-dimer hydrolase S112A/G181D/R187G/H266N/D370Y mutant complexd with 6-aminohexanoate

PDB ID 3vwr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools