3zf5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:00, 20 December 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Phage dUTPases control transfer of virulence genes by a proto-oncogenic G protein-like mechanism. (Staphylococcus bacteriophage 80alpha dUTPase Y84F mutant with dUpNHpp).==
==Phage dUTPases control transfer of virulence genes by a proto-oncogenic G protein-like mechanism. (Staphylococcus bacteriophage 80alpha dUTPase Y84F mutant with dUpNHpp).==
-
<StructureSection load='3zf5' size='340' side='right' caption='[[3zf5]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
+
<StructureSection load='3zf5' size='340' side='right'caption='[[3zf5]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3zf5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_phage_80alpha Staphylococcus phage 80alpha]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZF5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ZF5 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3zf5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_virus_80alpha Staphylococcus virus 80alpha]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZF5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ZF5 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DUP:2-DEOXYURIDINE+5-ALPHA,BETA-IMIDO-TRIPHOSPHATE'>DUP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.2&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3zez|3zez]], [[3zf0|3zf0]], [[3zf1|3zf1]], [[3zf2|3zf2]], [[3zf3|3zf3]], [[3zf4|3zf4]], [[3zf6|3zf6]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DUP:2-DEOXYURIDINE+5-ALPHA,BETA-IMIDO-TRIPHOSPHATE'>DUP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/dUTP_diphosphatase dUTP diphosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.23 3.6.1.23] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3zf5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zf5 OCA], [https://pdbe.org/3zf5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3zf5 RCSB], [https://www.ebi.ac.uk/pdbsum/3zf5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3zf5 ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3zf5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zf5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=3zf5 RCSB], [http://www.ebi.ac.uk/pdbsum/3zf5 PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A4ZF98_9CAUD A4ZF98_9CAUD]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 16: Line 18:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 3zf5" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[DUTPase 3D structures|DUTPase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Staphylococcus phage 80alpha]]
+
[[Category: Large Structures]]
-
[[Category: DUTP diphosphatase]]
+
[[Category: Staphylococcus virus 80alpha]]
-
[[Category: Alt, A]]
+
[[Category: Alt A]]
-
[[Category: Donderis, J]]
+
[[Category: Donderis J]]
-
[[Category: Garcia-Caballer, M]]
+
[[Category: Garcia-Caballer M]]
-
[[Category: Marina, A]]
+
[[Category: Marina A]]
-
[[Category: Mir-Sanchis, I]]
+
[[Category: Mir-Sanchis I]]
-
[[Category: Penades, J R]]
+
[[Category: Penades JR]]
-
[[Category: Tormo-Mas, M A]]
+
[[Category: Tormo-Mas MA]]
-
[[Category: G-protein]]
+
-
[[Category: Gene transfer]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Moonlighting protein]]
+
-
[[Category: P-loop]]
+
-
[[Category: Pathogenicity island]]
+
-
[[Category: Sapi induction]]
+

Current revision

Phage dUTPases control transfer of virulence genes by a proto-oncogenic G protein-like mechanism. (Staphylococcus bacteriophage 80alpha dUTPase Y84F mutant with dUpNHpp).

PDB ID 3zf5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools