1rri

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:25, 14 February 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1rri.gif|left|200px]]
 
-
{{Structure
+
==DHNA complex with 3-(5-amino-7-hydroxy-[1,2,3] triazolo [4,5-d]pyrimidin-2-yl)-benzoic acid==
-
|PDB= 1rri |SIZE=350|CAPTION= <scene name='initialview01'>1rri</scene>, resolution 2.00&Aring;
+
<StructureSection load='1rri' size='340' side='right'caption='[[1rri]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=A45:3-(5-AMINO-7-HYDROXY-[1,2,3]TRIAZOLO[4,5-D]PYRIMIDIN-2-YL)-BENZOIC ACID'>A45</scene>
+
<table><tr><td colspan='2'>[[1rri]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RRI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1RRI FirstGlance]. <br>
-
|ACTIVITY= [http://en.wikipedia.org/wiki/Dihydroneopterin_aldolase Dihydroneopterin aldolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.2.25 4.1.2.25]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
|GENE= FOLB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1280 Staphylococcus aureus])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A45:3-(5-AMINO-7-HYDROXY-[1,2,3]TRIAZOLO[4,5-D]PYRIMIDIN-2-YL)-BENZOIC+ACID'>A45</scene></td></tr>
-
}}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1rri FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1rri OCA], [https://pdbe.org/1rri PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1rri RCSB], [https://www.ebi.ac.uk/pdbsum/1rri PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1rri ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/FOLB_STAAU FOLB_STAAU] Catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rr/1rri_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1rri ConSurf].
 +
<div style="clear:both"></div>
-
'''DHNA complex with 3-(5-amino-7-hydroxy-[1,2,3] triazolo [4,5-d]pyrimidin-2-yl)-benzoic acid'''
+
==See Also==
-
 
+
*[[Aldolase 3D structures|Aldolase 3D structures]]
-
 
+
__TOC__
-
==Overview==
+
</StructureSection>
-
Potent inhibitors of 7,8-dihydroneopterin aldolase (DHNA; EC 4.1.2.25) have been discovered using CrystaLEAD X-ray crystallographic high-throughput screening followed by structure-directed optimization. Screening of a 10 000 compound random library provided several low affinity leads and their corresponding X-ray crystal structures bound to the enzyme. The presence of a common structural feature in each of the leads suggested a strategy for the construction of a directed library of approximately 1000 compounds that were screened for inhibitory activity in a traditional enzyme assay. Several lead compounds with IC(50) values of about 1 microM against DHNA were identified, and crystal structures of their enzyme-bound complexes were obtained by cocrystallization. Structure-directed optimization of one of the leads thus identified afforded potent inhibitors with submicromolar IC(50) values.
+
[[Category: Large Structures]]
-
 
+
-
==About this Structure==
+
-
1RRI is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1RRI OCA].
+
-
 
+
-
==Reference==
+
-
Discovery of potent inhibitors of dihydroneopterin aldolase using CrystaLEAD high-throughput X-ray crystallographic screening and structure-directed lead optimization., Sanders WJ, Nienaber VL, Lerner CG, McCall JO, Merrick SM, Swanson SJ, Harlan JE, Stoll VS, Stamper GF, Betz SF, Condroski KR, Meadows RP, Severin JM, Walter KA, Magdalinos P, Jakob CG, Wagner R, Beutel BA, J Med Chem. 2004 Mar 25;47(7):1709-18. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15027862 15027862]
+
-
[[Category: Dihydroneopterin aldolase]]
+
-
[[Category: Single protein]]
+
[[Category: Staphylococcus aureus]]
[[Category: Staphylococcus aureus]]
-
[[Category: Betz, S F.]]
+
[[Category: Betz SF]]
-
[[Category: Beutel, B A.]]
+
[[Category: Beutel BA]]
-
[[Category: Condroski, K R.]]
+
[[Category: Condroski KR]]
-
[[Category: Harlan, J E.]]
+
[[Category: Harlan JE]]
-
[[Category: Jakob, C G.]]
+
[[Category: Jakob CG]]
-
[[Category: Lerner, C G.]]
+
[[Category: Lerner CG]]
-
[[Category: Magdalinos, P.]]
+
[[Category: Magdalinos P]]
-
[[Category: McCall, J O.]]
+
[[Category: McCall JO]]
-
[[Category: Meadows, R P.]]
+
[[Category: Meadows RP]]
-
[[Category: Merrick, S M.]]
+
[[Category: Merrick SM]]
-
[[Category: Nienaber, V L.]]
+
[[Category: Nienaber VL]]
-
[[Category: Sanders, W J.]]
+
[[Category: Sanders WJ]]
-
[[Category: Severin, J M.]]
+
[[Category: Severin JM]]
-
[[Category: Stamper, G F.]]
+
[[Category: Stamper GF]]
-
[[Category: Stoll, V S.]]
+
[[Category: Stoll VS]]
-
[[Category: Swanson, S J.]]
+
[[Category: Swanson SJ]]
-
[[Category: Wagner, R.]]
+
[[Category: Wagner R]]
-
[[Category: Walter, K A.]]
+
[[Category: Walter KA]]
-
[[Category: A45]]
+
-
[[Category: 2]]
+
-
[[Category: 3] triazolo [4]]
+
-
[[Category: 5-d]pyrimidin-2-yl)-benzoic acid]]
+
-
[[Category: dhna complex with 3-(5-amino-7-hydroxy-[1]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Mar 20 13:55:21 2008''
+

Current revision

DHNA complex with 3-(5-amino-7-hydroxy-[1,2,3] triazolo [4,5-d]pyrimidin-2-yl)-benzoic acid

PDB ID 1rri

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1rri"
Personal tools