This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4h77

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:05, 8 November 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of haloalkane dehalogenase LinB from Sphingobium sp. MI1205==
==Crystal structure of haloalkane dehalogenase LinB from Sphingobium sp. MI1205==
-
<StructureSection load='4h77' size='340' side='right' caption='[[4h77]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
+
<StructureSection load='4h77' size='340' side='right'caption='[[4h77]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4h77]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sphingobium_sp._mi1205 Sphingobium sp. mi1205]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H77 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4H77 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4h77]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sphingobium_sp._MI1205 Sphingobium sp. MI1205]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H77 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4H77 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4h7d|4h7d]], [[4h7e|4h7e]], [[4h7f|4h7f]], [[4h7h|4h7h]], [[4h7i|4h7i]], [[4h7j|4h7j]], [[4h7k|4h7k]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">linB, dhaA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=407020 Sphingobium sp. MI1205])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4h77 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4h77 OCA], [https://pdbe.org/4h77 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4h77 RCSB], [https://www.ebi.ac.uk/pdbsum/4h77 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4h77 ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Haloalkane_dehalogenase Haloalkane dehalogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.8.1.5 3.8.1.5] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4h77 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4h77 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4h77 RCSB], [http://www.ebi.ac.uk/pdbsum/4h77 PDBsum]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A4PEU6_9SPHN A4PEU6_9SPHN] Catalyzes hydrolytic cleavage of carbon-halogen bonds in halogenated aliphatic compounds, leading to the formation of the corresponding primary alcohols, halide ions and protons (By similarity).[HAMAP-Rule:MF_01231]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 17: Line 18:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 4h77" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
-
*[[Dehalogenase|Dehalogenase]]
+
*[[Dehalogenase 3D structures|Dehalogenase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Haloalkane dehalogenase]]
+
[[Category: Large Structures]]
-
[[Category: Sphingobium sp. mi1205]]
+
[[Category: Sphingobium sp. MI1205]]
-
[[Category: Imai, F L]]
+
[[Category: Imai FL]]
-
[[Category: Mase, T]]
+
[[Category: Mase T]]
-
[[Category: Moriuchi, R]]
+
[[Category: Moriuchi R]]
-
[[Category: Nagata, K]]
+
[[Category: Nagata K]]
-
[[Category: Nagata, Y]]
+
[[Category: Nagata Y]]
-
[[Category: Ohtsuka, J]]
+
[[Category: Ohtsuka J]]
-
[[Category: Okai, M]]
+
[[Category: Okai M]]
-
[[Category: Tanokura, M]]
+
[[Category: Tanokura M]]
-
[[Category: Tsuda, M]]
+
[[Category: Tsuda M]]
-
[[Category: Alpha/beta hydrolase fold]]
+
-
[[Category: Hydrolase]]
+

Current revision

Crystal structure of haloalkane dehalogenase LinB from Sphingobium sp. MI1205

PDB ID 4h77

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4h77"
Personal tools