4gxl

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:51, 20 March 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
 +
==The crystal structure of Galectin-8 C-CRD in complex with NDP52==
==The crystal structure of Galectin-8 C-CRD in complex with NDP52==
-
<StructureSection load='4gxl' size='340' side='right' caption='[[4gxl]], [[Resolution|resolution]] 2.02&Aring;' scene=''>
+
<StructureSection load='4gxl' size='340' side='right'caption='[[4gxl]], [[Resolution|resolution]] 2.02&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4gxl]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GXL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4GXL FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4gxl]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GXL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4GXL FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.023&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">LGALS8 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4gxl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4gxl OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4gxl RCSB], [http://www.ebi.ac.uk/pdbsum/4gxl PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4gxl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4gxl OCA], [https://pdbe.org/4gxl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4gxl RCSB], [https://www.ebi.ac.uk/pdbsum/4gxl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4gxl ProSAT]</span></td></tr>
</table>
</table>
-
<div style="background-color:#fffaf0;">
+
== Function ==
-
== Publication Abstract from PubMed ==
+
[https://www.uniprot.org/uniprot/LEG8_HUMAN LEG8_HUMAN] Lectin with a marked preference for 3'-O-sialylated and 3'-O-sulfated glycans.<ref>PMID:21288902</ref>
-
Autophagy, the process of lysosome-dependent degradation of cytosolic components, is a mechanism by which cells selectively engulf invading pathogens to protect themselves against infection. Galectin-8, a cytosolic protein with specificity for beta-galactoside-containing glycans, binds endosomal and lysosomal membranes that have been damaged, for example, by pathogens, and selectively recruits the autophagy cargo receptor NDP52 to induce autophagy. We solved the crystal structure of the NDP52-galectin-8 complex to show how NDP52 exclusively binds galectin-8 and, consequently, why other galectins do not restrict the growth of Salmonella in human cells.
+
-
 
+
-
Sterical hindrance promotes selectivity of the autophagy cargo receptor NDP52 for the danger receptor galectin-8 in antibacterial autophagy.,Li S, Wandel MP, Li F, Liu Z, He C, Wu J, Shi Y, Randow F Sci Signal. 2013 Feb 5;6(261):ra9. doi: 10.1126/scisignal.2003730. PMID:23386746<ref>PMID:23386746</ref>
+
-
 
+
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+
-
</div>
+
==See Also==
==See Also==
-
*[[Galectin|Galectin]]
+
*[[Galectin 3D structures|Galectin 3D structures]]
== References ==
== References ==
<references/>
<references/>
Line 23: Line 18:
</StructureSection>
</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: He, C]]
+
[[Category: Large Structures]]
-
[[Category: Li, F]]
+
[[Category: He C]]
-
[[Category: Li, S]]
+
[[Category: Li F]]
-
[[Category: Liu, Z]]
+
[[Category: Li S]]
-
[[Category: Randow, F]]
+
[[Category: Liu Z]]
-
[[Category: Shi, Y]]
+
[[Category: Randow F]]
-
[[Category: Wandel, M P]]
+
[[Category: Shi Y]]
-
[[Category: Wu, J]]
+
[[Category: Wandel MP]]
-
[[Category: Carbohydrate recognition]]
+
[[Category: Wu J]]
-
[[Category: Ndp52]]
+
-
[[Category: Protein binding]]
+
-
[[Category: Protein-protein interaction]]
+

Current revision

The crystal structure of Galectin-8 C-CRD in complex with NDP52

PDB ID 4gxl

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools