This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4ic5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:13, 8 November 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
 +
==Crystal structure of Deg5==
==Crystal structure of Deg5==
-
<StructureSection load='4ic5' size='340' side='right' caption='[[4ic5]], [[Resolution|resolution]] 2.61&Aring;' scene=''>
+
<StructureSection load='4ic5' size='340' side='right'caption='[[4ic5]], [[Resolution|resolution]] 2.61&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4ic5]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IC5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4IC5 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4ic5]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IC5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4IC5 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.607&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DEGP5, HHOA, At4g18370, F28J12.30 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4ic5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ic5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=4ic5 RCSB], [http://www.ebi.ac.uk/pdbsum/4ic5 PDBsum]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ic5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ic5 OCA], [https://pdbe.org/4ic5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ic5 RCSB], [https://www.ebi.ac.uk/pdbsum/4ic5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ic5 ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DEGP5_ARATH DEGP5_ARATH] Probable serine protease.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 15: Line 18:
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
</div>
 +
<div class="pdbe-citations 4ic5" style="background-color:#fffaf0;"></div>
== References ==
== References ==
<references/>
<references/>
Line 20: Line 24:
</StructureSection>
</StructureSection>
[[Category: Arabidopsis thaliana]]
[[Category: Arabidopsis thaliana]]
-
[[Category: Fan, H]]
+
[[Category: Large Structures]]
-
[[Category: Gao, F]]
+
[[Category: Fan H]]
-
[[Category: Gong, W]]
+
[[Category: Gao F]]
-
[[Category: Liu, L]]
+
[[Category: Gong W]]
-
[[Category: Sun, W]]
+
[[Category: Liu L]]
-
[[Category: Bets-barrel]]
+
[[Category: Sun W]]
-
[[Category: Calcium binding]]
+
-
[[Category: Chloroplast]]
+
-
[[Category: Endopeptidase]]
+
-
[[Category: Hydrolase]]
+

Current revision

Crystal structure of Deg5

PDB ID 4ic5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools